Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03017 ATGCCTTCTCCTTCATTTCACAAGCTTGTTTTACCCTCCACTCTTCAAGCTAAGAAACTGAGGCTTCCAGATGATTTTGCAAAGAAATATGGGGTAAATATTTCTTCGATTGTTACTCTCACAGTTCCTGATGGAAGCGCTTTTGCTACTTCTGAGATTAACTATAAATCACCTGCACAAAGCAGTAACAAAGCGCCTCACTTTGCAAAACATCTTGAAGTTTTCGAAGATTTGGAAGATGAAGATTCCATTGAAATGATGCATTTGTCGCCTACAAACCTTACACATAGCCCATTGCAAAACAAAGCTGTTTCTGGATCAGCCGATAAAGTTACGCCTGGCAAGTCTCATTCGCCTCCAGCACTGAAGAATCTTTTTAATGGATCTAAACTTAATAGCCTAGACAACCAGATGACCCGAGATGTAGGTCTCCAGTTCAATGTAGTTGAGTTTAAAAAGTCTACTGAAGAGGTGAAGTTGCGTACGGCTACTGATGAAAAGGTTAAAAAGACGGCGACAAAGAAGCGGAAATCAGATGTCCTGGAACCTCCTTCTGAACATGAAGATGAAGTAGAAATGCGCAATCGATTTTACGAAAGTGCATCAGCTAGGAAAAGAACCGTGACAGCTGAAGAAAGAGAAAAGGCTATGAATGAAGCAAAAGCATTTGAACCATCTAATCCTTTCTGCCGCGTTGTCCTGCGGCCCTCCTATTTATATAGGGGATGCATAATGTATCTACCATCCTGCTTTGCAGAGAAGCATTTAAACGGTATTTCAGGCTTTATAAAGCTTCAAATCTCTGATGGTGGGAAACAGTGGTCGGTTCGCTGTCTTTATAAAGACGGTAAAGCTAAGTTAAGCCAAGGGTGGTTTGAATTTGCATTAGAGAACAATTTAGGTGAAGGAGATGTCTGTGTGTTTGAGCTGGTTGCAGCGGACGAAGTAGTGCTGCAAGTCACTTTTTTTCGTATTACTGAGGATGAAGGACTGTTGAGCCCGCCGCCTTTGCAGCAAAACCAACATGTGACCACTGCTAAACTATTAAAAGTCCCTTTCAGCATGACCTGA 1071 0.4183 MPSPSFHKLVLPSTLQAKKLRLPDDFAKKYGVNISSIVTLTVPDGSAFATSEINYKSPAQSSNKAPHFAKHLEVFEDLEDEDSIEMMHLSPTNLTHSPLQNKAVSGSADKVTPGKSHSPPALKNLFNGSKLNSLDNQMTRDVGLQFNVVEFKKSTEEVKLRTATDEKVKKTATKKRKSDVLEPPSEHEDEVEMRNRFYESASARKRTVTAEEREKAMNEAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGISGFIKLQISDGGKQWSVRCLYKDGKAKLSQGWFEFALENNLGEGDVCVFELVAADEVVLQVTFFRITEDEGLLSPPPLQQNQHVTTAKLLKVPFSMT 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03017 356 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 145 330 IPR044837 -
Trre8g03017 356 SMART B3_2 230 326 IPR003340 GO:0003677
Trre8g03017 356 CDD B3_DNA 228 324 IPR003340 GO:0003677
Trre8g03017 356 Pfam B3 DNA binding domain 233 324 IPR003340 GO:0003677
Trre8g03017 356 Gene3D - 207 328 IPR015300 -
Trre8g03017 356 ProSiteProfiles B3 DNA-binding domain profile. 230 326 IPR003340 GO:0003677
Trre8g03017 356 SUPERFAMILY DNA-binding pseudobarrel domain 223 325 IPR015300 -
Trre8g03017 356 MobiDBLite consensus disorder prediction 171 191 - -
Trre8g03017 356 SUPERFAMILY DNA-binding pseudobarrel domain 3 47 IPR015300 -
Trre8g03017 356 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03017 Trre-Chr8 26736272 26738628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03017 1 330 B3 DNA Binding Superfamily AT3G18990 44.531 9.17e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre8g03017 B3 9.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03017 - - gmx:100813285 458.373