Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03016 ATGCCTTCTCCTTCATTTCACAAGCTTGTTTTACCCTCCACTCTTCAAGCTAAGAAACTGAGGCTTCCAGATGATTTTGCAAAGAAATATGGGGTAAATATTTCTTCGATTGTTACTCTCACAGTTCCTGATGGAAGCGCGTGGCGTGTAGGATTAAAAAAAGAAGACAGCAAATTTTGGTTTGTCAATGGTTGGCATGAATTTGTTCAAAACTATTCGATTGGTACTGGATACTTGTTGTTATTCAGATACGAAGGAAAGTCGTCTTTCATTGTTAATATTTACAGTTTTGCTACTTCTGAGATTAACTATAAATCACCTGCACAAAGCAGTAACAAAGCGCCTCACTTTGCAAAACATCTTGAAGTTTTCGAAGATTTGGAAGATGAAGATTCCATTGAAATGATGCATTTGTCGCCTACAAACCTTACACATAGCCCATTGCAAAACAAAGCTGTTTCTGGATCAGCCGATAAAGTTACGCCTGGCAAGTCTCATTCGCCTCCAGCACTGAAGAATCTTTTTAATGGATCTAAACTTAATAGCCTAGACAACCAGATGACCCGAGATGTAGGTCTCCAGTTCAATGTAGTTGAGTTTAAAAAGTCTACTGAAGAGGTGAAGTTGCGTACGGCTACTGATGAAAAGGTTAAAAAGACGGCGACAAAGAAGCGGAAATCAGATGTCCTGGAACCTCCTTCTGAACATGAAGATGAAGTAGAAATGCGCAATCGATTTTACGAAAGTGCATCAGCTAGGAAAAGAACCGTGACAGCTGAAGAAAGAGAAAAGGCTATGAATGAAGCAAAAGCATTTGAACCATCTAATCCTTTCTGCCGCGTTGTCCTGCGGCCCTCCTATTTATATAGGGGATGCATAATGTATCTACCATCCTGCTTTGCAGAGAAGCATTTAAACGGTATTTCAGGCTTTATAAAGCTTCAAATCTCTGATGGTGGGAAACAGTGGTCGGTTCGCTGTCTTTATAAAGACGGTAAAGCTAAGTTAAGCCAAGGGTGGTTTGAATTTGCATTAGAGAACAATTTAGGTGAAGGAGATGTCTGTGTGTTTGAGCTGGTTGCAGCGGACGAAGTAGTGCTGCAACATGACCTGACTTCAACTAAATTGATTCGAAATTAA 1140 0.4018 MPSPSFHKLVLPSTLQAKKLRLPDDFAKKYGVNISSIVTLTVPDGSAWRVGLKKEDSKFWFVNGWHEFVQNYSIGTGYLLLFRYEGKSSFIVNIYSFATSEINYKSPAQSSNKAPHFAKHLEVFEDLEDEDSIEMMHLSPTNLTHSPLQNKAVSGSADKVTPGKSHSPPALKNLFNGSKLNSLDNQMTRDVGLQFNVVEFKKSTEEVKLRTATDEKVKKTATKKRKSDVLEPPSEHEDEVEMRNRFYESASARKRTVTAEEREKAMNEAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGISGFIKLQISDGGKQWSVRCLYKDGKAKLSQGWFEFALENNLGEGDVCVFELVAADEVVLQHDLTSTKLIRN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03016 379 SMART B3_2 279 375 IPR003340 GO:0003677
Trre8g03016 379 SMART B3_2 6 98 IPR003340 GO:0003677
Trre8g03016 379 CDD B3_DNA 277 360 IPR003340 GO:0003677
Trre8g03016 379 Gene3D - 256 371 IPR015300 -
Trre8g03016 379 ProSiteProfiles B3 DNA-binding domain profile. 279 375 IPR003340 GO:0003677
Trre8g03016 379 MobiDBLite consensus disorder prediction 220 240 - -
Trre8g03016 379 Pfam B3 DNA binding domain 282 365 IPR003340 GO:0003677
Trre8g03016 379 Pfam B3 DNA binding domain 8 95 IPR003340 GO:0003677
Trre8g03016 379 MobiDBLite consensus disorder prediction 153 172 - -
Trre8g03016 379 Gene3D - 1 98 IPR015300 -
Trre8g03016 379 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Trre8g03016 379 CDD B3_DNA 4 96 IPR003340 GO:0003677
Trre8g03016 379 SUPERFAMILY DNA-binding pseudobarrel domain 272 362 IPR015300 -
Trre8g03016 379 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Trre8g03016 379 PANTHER B3 DOMAIN-CONTAINING 3 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03016 Trre-Chr8 26736246 26738628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03016 1 368 B3 DNA Binding Superfamily AT3G18990 51.892 1.58e-121 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre8g03016 B3 7.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03016 - - gmx:100813285 536.184