Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02995 ATGGAGATTCTCCACTCCGACGAAACCTCACCAGAACCTTCTATCCCTACCCCGAACGACGATTCCGCAGACCCTGACGAAGGTGCGACTCTCGATGTATCTGGAAAGAATTTGGAGTTTCCGGTACCGGAGAATCCCCAAGACGATGCCGTTGAGAGTTTGTATATGTATAAGAATGTTTACAGTTTGATTCCGAAGACTGTTGGTGGTTTGGTAAGATTGAAAACGCTGAAATTCTTTGGAAATGAGATTAATTTGTTTGCACCGGAGTTTGGGAATATGACGAGGTTAGAGAGGTTGCAGATGAAGGTATCTTCACCTGGAATTGGTGGGTTGCCGTTACATAAATTGAAGGGTTTGAAAGAACTTGAGCTTTCTAAAGGTCCTTCTAGGCCTTCTGCTTTTCCTATATTGACTGAGATTGCTGCTCTCAAGTGTTTGACAAAGCTTTGCATTTGTCACTTCTCTATAAGATATCTTCCTCCGGAAATTGGGTGCTTAAAGAATCTGGAGTATCTTGATCTTTCATTCAATAAATTGAAGACATTGCCCCCAGAGATTTGTTCTTTAGAAGTATTAATATCCTTGAAAGTTGCGAATAATAAGTTGGTGGAACTACCACCGGCAATGACATCACTATCAAGGTTGGAGAGTTTGGACCTGTCAAATAATAGGTTGACTTCATTAGGGTCTCTTGAACTTAGCTCAATGCATAGACTTCAGAACTTAAATCTTCAGTACAACAAGCTACCCAACATTTTTCAAATTCCTTCATGGATATGCTGTAAAATGGAAGGAAATGATGGAGATAGATGCAAAGACAACTATAGCAGTTCTTCTGTTGAAATGGATGTCTATGAAAGCAATTTACAGGAAAATGAGGAAACATTTTCTCATGGAACTCAGAACACCTCATCAAGCATATTAACAAACAACTCATCTAACAATAGAGGTTTTGCAGCCTGGAAGTCGGGTAGACGGTGGAAGCGACGGCACACTAAACAGCAGAAAACTCGTCAAGAGCAGAAAGCTCGTCAAGAGCGGTTGAATAACAGCAGGAAGTGGAAAGGTGTAGATCATGACCAGTTGTTAAGCAAGAAGATCCACAGAATTTCTGAACCTGAAAATCTGGATACTCTTGTTTCTGAAAATGACATAGGAACTATATCAGACAATGGGAGCCTGAATGACAATCATGAAAAAATATTATCCGAAGAAGCAGTCCACAACAATCTAATTGATACTGTCAACAATGATAGTCTGGATGACAATCATAAAAAAATATTCTCCGAAGAAGCAGTGCACAATAATTTAATTGATAATGTCAACGATGATGAGGTAATCATTGAAAAGCAGTTTTCTCAAGAAGATTGCTGCACTGTGGAAGGTAAAGATGAAAGAGATGCATCCTCATGCTCCTTAGACAATGTGCGAAGTGAACAAGATGGAGCATCTTGTTCAGATTTTTCAAAGTGTAATTTTAAATCAAAGAGGCATTCAGATCGAGATCTCGATAATCCTAAACCCTGCAAGTCTAGAAAACCAATTGGTGATGGCTCATTATTGTCTTCCAAGTACAGTAAAATTTCATTTTGTGGTACCGAGGACCATCTATCAGATGGCTTTTATGATGCGGGACGCGATCGACCATTTATGCCTCTTGAGAGTTATGAGCAAAATCAGTGTCTTGCATCTCGTGAAGTCATCCTGCTAGACAGACAAAGGGATGAAAAATTGGATGCCATCATGCTATCTGCTCAGGCAATGGTCTCTAATTTGAAGCAGTTAAATGATTTAAACAAACCCGGGAGCCAGGGTGAAGTTGATAACTTGCAGACAGCATCACTGCTTGCACTCTTTGTATCTGATCATTTTGGCGGAAGTGATAGAGGTGCTATTATAGAAAGGACACGCAAATCTGTTTCTGGTTCAAACTATAATAAACCTTTTGTCTGTACATGTTCGGCCGGAAGTAGCACAAGTATAAATGTTGCAACCGAACCAGCTGTGAACACCATAGAAGATATTGATCTTTCTAAGATCTCTGAAAAAAATCTCGATTCTATAAAAAAAAGACGAAAGTCAATCATTGTTCCAATTGGTTCTGTTCAGTATGGCGTATGTAGGCATAGAGCTCTGCTTTTTAAGTATTTATGTGATCACATAGAGCCACCTGTACCTTGTGAGCTTGTTAGGGGTTACATGGATTTTTCACCACATGCCTGGAATATCATTCTCGTAAAGAGGGGTGTTACATGGGTTCGAATGCTTGTTGATGCTTGCCGACCTCATGATATTAGAGAAGAGAATGAATCAGAATTTTCCTGCAGGTACATACCTCTTAGACGAACCCAAATTCCTCTTTCGACTAGCAGTCTTCCTAGTCCTGATTATTCCTTTCCATCTCTCTCTAACTGTGATGAACTTGAGAAAAAAGCTTCAACTACATTAGTTCGGTGCAAATATGGATCAGTTGAGGCTGCAGTAAAGGTGCGTACTTTGGAAGTACAAGGGAGTTCAGCAGACAAAATAAAAAACTTTGAATATAATTCTTTGGGAGAAATCAGAATTCTTGGTGCTTTTAAACACCCCTGCATAGTGGAAATGTATGGTCACCAAATATCATGCAAATGGACTATCTCAGCTGATGGCACTCCTGAGCAACGTGTGTTGAGATCTGCAATTTTTTTGGAATATGTGGAAGCGGGTTCCTTAAAAACCTATCTAGCGGAGTTGTCAGGAGCGGGTGAAAAGCATGTTCCTGTGGAGTTTGCCTTGTATATTGCCAAAGATGTCTCATGTGCTTTGTCGGAGCTGCACTCGAAGCACATAATTCATCGTGACATAAAAAGTGAAAACATTCTGTTTGATTGTGATAGGAAGAGAGATGATGGAACTCCCACTGTGAAGCTCTGTGATTTTGATAGTGCAGTGCCGCTAAGATCACCTTTACATGCATGCTGTATTGCTCAAGTGGGAACACCTCCTCCTTGTGTGTGTGTTGGAACACCTCGATGGATGGCTCCGGAGGTCATGCGGACTATGTATAAAAAGAACACTTATGGATTGGAAGCGGATATTTGGTCATTTGGGTGTTTACTTCTAGAGATGCTAACTTTGCAAATTCCATATTTTGGATTACCCGATTCACATGTCCATGATAGTCTGCAGATGGGTAAGCGACCACAATTAACTGATGAACTGGAGGCATTGAGTTCAATGGGCGAACCCACGATGATTCAATCTGGTGAAGAGCTGGAAAAATCAGATGCTGAGACAGACACACTGAAGTTCCTTGTTGATTTGTTTCATAGGTGTGTGGAAGAAAATCCAAATGAACGACCTACAGCTGAAGAAATCTATGAAATGCTGCTTGAACACACAAGTCGCATACAAGTTCAAAATGCCGGGGAGATTTAA 3420 0.4047 MEILHSDETSPEPSIPTPNDDSADPDEGATLDVSGKNLEFPVPENPQDDAVESLYMYKNVYSLIPKTVGGLVRLKTLKFFGNEINLFAPEFGNMTRLERLQMKVSSPGIGGLPLHKLKGLKELELSKGPSRPSAFPILTEIAALKCLTKLCICHFSIRYLPPEIGCLKNLEYLDLSFNKLKTLPPEICSLEVLISLKVANNKLVELPPAMTSLSRLESLDLSNNRLTSLGSLELSSMHRLQNLNLQYNKLPNIFQIPSWICCKMEGNDGDRCKDNYSSSSVEMDVYESNLQENEETFSHGTQNTSSSILTNNSSNNRGFAAWKSGRRWKRRHTKQQKTRQEQKARQERLNNSRKWKGVDHDQLLSKKIHRISEPENLDTLVSENDIGTISDNGSLNDNHEKILSEEAVHNNLIDTVNNDSLDDNHKKIFSEEAVHNNLIDNVNDDEVIIEKQFSQEDCCTVEGKDERDASSCSLDNVRSEQDGASCSDFSKCNFKSKRHSDRDLDNPKPCKSRKPIGDGSLLSSKYSKISFCGTEDHLSDGFYDAGRDRPFMPLESYEQNQCLASREVILLDRQRDEKLDAIMLSAQAMVSNLKQLNDLNKPGSQGEVDNLQTASLLALFVSDHFGGSDRGAIIERTRKSVSGSNYNKPFVCTCSAGSSTSINVATEPAVNTIEDIDLSKISEKNLDSIKKRRKSIIVPIGSVQYGVCRHRALLFKYLCDHIEPPVPCELVRGYMDFSPHAWNIILVKRGVTWVRMLVDACRPHDIREENESEFSCRYIPLRRTQIPLSTSSLPSPDYSFPSLSNCDELEKKASTTLVRCKYGSVEAAVKVRTLEVQGSSADKIKNFEYNSLGEIRILGAFKHPCIVEMYGHQISCKWTISADGTPEQRVLRSAIFLEYVEAGSLKTYLAELSGAGEKHVPVEFALYIAKDVSCALSELHSKHIIHRDIKSENILFDCDRKRDDGTPTVKLCDFDSAVPLRSPLHACCIAQVGTPPPCVCVGTPRWMAPEVMRTMYKKNTYGLEADIWSFGCLLLEMLTLQIPYFGLPDSHVHDSLQMGKRPQLTDELEALSSMGEPTMIQSGEELEKSDAETDTLKFLVDLFHRCVEENPNERPTAEEIYEMLLEHTSRIQVQNAGEI 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02995 1139 ProSiteProfiles Leucine-rich repeat profile. 215 236 IPR001611 GO:0005515
Trre8g02995 1139 Gene3D Transferase(Phosphotransferase) domain 1 802 1137 - -
Trre8g02995 1139 FunFam Leucine-rich repeat protein kinase family protein 849 1130 - -
Trre8g02995 1139 PRINTS Leucine-rich repeat signature 170 183 - -
Trre8g02995 1139 PRINTS Leucine-rich repeat signature 213 226 - -
Trre8g02995 1139 SMART LRR_typ_2 167 190 IPR003591 -
Trre8g02995 1139 SMART LRR_typ_2 237 263 IPR003591 -
Trre8g02995 1139 SMART LRR_typ_2 213 236 IPR003591 -
Trre8g02995 1139 SMART LRR_typ_2 71 93 IPR003591 -
Trre8g02995 1139 SMART LRR_sd22_2 167 192 - -
Trre8g02995 1139 SMART LRR_sd22_2 213 234 - -
Trre8g02995 1139 SMART serkin_6 807 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02995 1139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 944 956 IPR008271 GO:0004672|GO:0006468
Trre8g02995 1139 MobiDBLite consensus disorder prediction 496 516 - -
Trre8g02995 1139 MobiDBLite consensus disorder prediction 323 338 - -
Trre8g02995 1139 MobiDBLite consensus disorder prediction 339 355 - -
Trre8g02995 1139 MobiDBLite consensus disorder prediction 496 512 - -
Trre8g02995 1139 Gene3D Ribonuclease Inhibitor 28 282 IPR032675 -
Trre8g02995 1139 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 97 1131 - -
Trre8g02995 1139 MobiDBLite consensus disorder prediction 293 320 - -
Trre8g02995 1139 MobiDBLite consensus disorder prediction 293 355 - -
Trre8g02995 1139 SUPERFAMILY Protein kinase-like (PK-like) 800 1124 IPR011009 -
Trre8g02995 1139 ProSiteProfiles Protein kinase domain profile. 803 1130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02995 1139 Pfam Protein kinase domain 841 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02995 1139 FunFam Leucine-rich repeat protein kinase family protein 44 283 - -
Trre8g02995 1139 Pfam Leucine rich repeat 195 250 IPR001611 GO:0005515
Trre8g02995 1139 ProSiteProfiles Leucine-rich repeat profile. 169 190 IPR001611 GO:0005515
Trre8g02995 1139 Pfam Ethylene-responsive protein kinase Le-CTR1 676 759 - -
Trre8g02995 1139 SMART LRR_bac_2 167 186 - -
Trre8g02995 1139 SMART LRR_bac_2 213 232 - -
Trre8g02995 1139 SMART LRR_bac_2 190 209 - -
Trre8g02995 1139 SUPERFAMILY L domain-like 31 254 - -
Trre8g02995 1139 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02995 Trre-Chr8 26426803 26434908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02995 823 1127 MAP Kinase Kinase Kinase AT5G66850 29.545 2.51e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Trre8g02995 Pkinase 2.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02995 - - tpra:123913087 2108.95