Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02975 ATGGACGATTATGCTAGCAGCGACGACGATTATCAATTCTCCGATCAAGAAGATTCCGATGTCGAATTAATCGAAAACGACGATCGCAATTTTCAATTACTCTCTTCTAAGGCTCCCTCTGCTCAGGTGATTACAAAGGAATCACTGATAGCTGCACAGAAGGAGGATTTGCGCAGAGTGATGGACATGCTTTCTGTGAGACAACAACATGCGCGCACACTGCTTATTTATCATCGTTGGGATGTGGACTGTTTGTTTGAAGTTTATGTAGAAAGAGGGAAGGCATTTATGTTTGCTCAGGCTGGTGTTAGTGTGGATGAATGTCGTGACTCTGACTCATCGGTTAGTGCGTTAGTAATGTGCGAAATCTGCATGGACGACGTTCCTAGTGATGAAGCAACAAGAATGGACTGTGGTCACTGCTTTTGCAACACCTGTTGGAAACAACATTTTTTTGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGGCTCACAAATGTAATTACATTTGTGATGAAGCTGTCGTAAGAACTCTACTCAGTAGAGAGCACCCTGATATGGCAGAGAAATATGAACGGTTTCTTCTTGAGTCCTACATCGAAGACAATAAAAGAGTTAAATGGTGTCCGAGCACTCCACATTGTGGGAATGCAATTCGTGTCGAGGGTGATAGATTGTGTGAGTGCCGCGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACAAAGCCTTGTCCAAAGTGCCACAAACCGGTGGAGAAAAATGGTGGCTGTAATTTGGTCAGCTGTATTTGCGGTCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACCGGCCGGGAGCATACCTGGTCAAGTATAGCAGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAGAAAACAGCTGAGCGGGCCAAGAGGGATCTCTATAGGTACATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGGTCTCATACAAGGGAAGATTTCTGCTTCGGAAGAAAAAAGTGCTGAACGAAAAAATTCTGAACTCACAGATTATAGCTGGGTGCATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTTTCACATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGACGAAATGTCAGAAGCTGAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGTTTGAAGCAAATGTTGAAAGACTCTCTAAGATTTTGGAGGAGCCTTTCGAAACCTTTGATGATGCTGATGTCATGAAGACAAGGATGGAGATAATAAATCTGTCAACACTTATTGATGGTCTTTGTAAAAAAATGTATGAGTGCATTGAGAATGATTTATTGGAATCTATTAGTCTTGGTAGTATCCACAGTATAGCACCATATAAATCAAAGGGCATAGAGAGGGCTTCAGAGCTTCCAGTTTGTTTTAGCAATAAAGCCAGCAATACGGAAATGTTACTGAGTGAAAAGGATTCTTGTATATATGCTGCAAGCGTAGGTGTAACAGCAGAGCTTAATCAGTCAGAAGAGAGTGGATGTTCTTCTCGTAAGCGAGCCCGAAAAGACGGTGGCTTTTTTGATCTAAACTTGCCAGCTGAGTTTGTAGACAGAAATTGA 1686 0.414 MDDYASSDDDYQFSDQEDSDVELIENDDRNFQLLSSKAPSAQVITKESLIAAQKEDLRRVMDMLSVRQQHARTLLIYHRWDVDCLFEVYVERGKAFMFAQAGVSVDECRDSDSSVSALVMCEICMDDVPSDEATRMDCGHCFCNTCWKQHFFVKINEGQSKRIRCMAHKCNYICDEAVVRTLLSREHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEGDRLCECRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKGLIQGKISASEEKSAERKNSELTDYSWVHNGLSRLFRSRRVLSHSYAFAFYMFGDELFKDEMSEAEREIKQNLFEDQQQQFEANVERLSKILEEPFETFDDADVMKTRMEIINLSTLIDGLCKKMYECIENDLLESISLGSIHSIAPYKSKGIERASELPVCFSNKASNTEMLLSEKDSCIYAASVGVTAELNQSEESGCSSRKRARKDGGFFDLNLPAEFVDRN 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02975 561 Pfam Ariadne domain 299 561 IPR045840 -
Trre8g02975 561 MobiDBLite consensus disorder prediction 1 20 - -
Trre8g02975 561 SMART ibrneu5 192 295 IPR002867 GO:0008270
Trre8g02975 561 ProSiteProfiles TRIAD supradomain profile. 117 299 IPR044066 -
Trre8g02975 561 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Trre8g02975 561 FunFam RBR-type E3 ubiquitin transferase 116 206 - -
Trre8g02975 561 CDD RING-HC_RBR_TRIAD1 119 171 - -
Trre8g02975 561 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 382 IPR031127 GO:0004842|GO:0016567
Trre8g02975 561 CDD Rcat_RBR_ARI1-like 243 296 - -
Trre8g02975 561 Gene3D - 226 472 - -
Trre8g02975 561 FunFam RBR-type E3 ubiquitin transferase 226 470 - -
Trre8g02975 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 225 IPR013083 -
Trre8g02975 561 Pfam IBR domain, a half RING-finger domain 192 233 IPR002867 GO:0008270
Trre8g02975 561 SUPERFAMILY RING/U-box 241 283 - -
Trre8g02975 561 SUPERFAMILY RING/U-box 118 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02975 Trre-Chr8 26132731 26136426 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02975 61 495 ARIADNE family AT2G16090 64.968 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02975 K11968 - gmx:100783343 888.256