Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02970 ATGTTTGCTCAGGCTGGTGTTAGTATGGATAAATATCGTAACACTGGCTCGCCGGTTAGTGCTGTAGTAATGTGTGAAATCTGCATAGACAAGGTTCCTAGTAATGAAGTAACAAGAATGGACTGTGGTCACTGCTTTTGCAACTCCTGTTGGACACAACATTTTTTAGTCAAGGTAAATGAGGGTCAAAGTAAACGCATCAGATGCATGGCTCACAAATGTAATTCAATTTGCGATGAAACTGTCATAATAACTCTACTCGGTAGAAACCACCCTGATATGGCTGAGAAATATGAACGCTTTCTTCTTGAATCCTACATCGATGACAATAAGAAAGTTAAATGGTGTCCAAGCACGCCACATTGTGGGAATGCAATTCGTGCTGAGGGTGATGACTTGTGCGAGGTAGAATGTTCATGTGGTGAACAATTTTGTTTCAATTGCTTGTCAGAGACACACTCCCCTTGTTCATGTTTGATGTGGAAGCTTTGGCAACATGATGAGCGTCGAGATGAAGTAGAATCTGATAATTGGATACTTCTTCATACGAAACCTTGTCCAACATGCCACAGACCGGTGGAAAAGAACGGTGGTTGTAATTGGGTTGGCTGTATTTGCGACCAACCATTTTGTTGGTTGTGTGGTGGACCTATTGGACACGACCATACCGATTCAGGTATAGCTGGTCATGACTGTGGTCGCTACAAAGAACCCGAAAAAACCGCGGACCAAGAAAAGAGGGATCTCCTTAGGTACAAACATTATTATAACCGATATAAAGCTCACAAAAACTCCTTTACGTTTGAAAGTAAACTGAAAGGTATCACACAAGAGAAGATTGCTATTTTCGAAGAGAAACATTCTCAATGGGAAAAATCTGAAATCAGAGACTATAGCTGGGTAAATAATGGATTCTCTAGACTTCTCAGATCTAGGCGCATCCTTTCATACTCATACGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTCAAAGATCAAATGTCAAAAGCTGAAAAGGAAATTAAACAAAACTTATTTGAGGATCAACAACAGCAGTTAGAGGCAAATGTTGAAAGACTCTCTGAGATTTTGCAAGAGTCTTTCCAATCCGTACAATATAGTACGATTATGAAGAGTAGGATGCAGATAATAACTCTGTCAACAGTTATTGATGATCTTTGTAAGAAAATGTATGAATTCATCGAGAATGATTTATTGGATTCTGTTAATCTTGGTAGTATTCACATTATAGCACCATATAATAATAGATCAAAAGGCATAGAGAGGGCTTCATAG 1299 0.3888 MFAQAGVSMDKYRNTGSPVSAVVMCEICIDKVPSNEVTRMDCGHCFCNSCWTQHFLVKVNEGQSKRIRCMAHKCNSICDETVIITLLGRNHPDMAEKYERFLLESYIDDNKKVKWCPSTPHCGNAIRAEGDDLCEVECSCGEQFCFNCLSETHSPCSCLMWKLWQHDERRDEVESDNWILLHTKPCPTCHRPVEKNGGCNWVGCICDQPFCWLCGGPIGHDHTDSGIAGHDCGRYKEPEKTADQEKRDLLRYKHYYNRYKAHKNSFTFESKLKGITQEKIAIFEEKHSQWEKSEIRDYSWVNNGFSRLLRSRRILSYSYAFAFYMFGDELFKDQMSKAEKEIKQNLFEDQQQQLEANVERLSEILQESFQSVQYSTIMKSRMQIITLSTVIDDLCKKMYEFIENDLLDSVNLGSIHIIAPYNNRSKGIERAS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02970 432 Pfam Ariadne domain 237 432 IPR045840 -
Trre8g02970 432 SUPERFAMILY RING/U-box 178 222 - -
Trre8g02970 432 SUPERFAMILY RING/U-box 22 108 - -
Trre8g02970 432 FunFam RBR-type E3 ubiquitin transferase 154 407 - -
Trre8g02970 432 Gene3D - 154 409 - -
Trre8g02970 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 110 IPR013083 -
Trre8g02970 432 SUPERFAMILY RING/U-box 96 165 - -
Trre8g02970 432 FunFam RBR-type E3 ubiquitin transferase 20 110 - -
Trre8g02970 432 SMART ibrneu5 162 232 IPR002867 GO:0008270
Trre8g02970 432 SMART ibrneu5 96 158 IPR002867 GO:0008270
Trre8g02970 432 ProSiteProfiles TRIAD supradomain profile. 21 236 IPR044066 -
Trre8g02970 432 Pfam IBR domain, a half RING-finger domain 96 158 IPR002867 GO:0008270
Trre8g02970 432 CDD BRcat_RBR_ANKIB1 103 165 - -
Trre8g02970 432 ProSiteProfiles Zinc finger RING-type profile. 25 73 IPR001841 -
Trre8g02970 432 Coils Coil 344 364 - -
Trre8g02970 432 CDD RING-HC_RBR_TRIAD1 23 76 - -
Trre8g02970 432 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 278 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02970 Trre-Chr8 26110113 26111866 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02970 27 432 ARIADNE family AT2G16090 63.391 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02970 K11968 - gmx:100808068 659.833