Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02954 ATGGGTCGTCGCAAAATTGAAATTGAGAAGGTGAAAGACCCTAAAATAAGGCAGGTCACATTCTCAAAGCGTCGAACAGGCTTATTTAATAAAGCAAATGAATTGTCTATTTTATGTGGAGCAGAAGTCGCTATTGTCGTGTTTTCTCCAGGGAATAAGCCATACTCTTTTGGTCACCTAGGAGTTGATGTTGTTGCGGCAAAGTATCTTCAACAAGATCATGAATCAAGTGACTCTGAAAGAGACCCCTCATATGATGCTTCCAATATGAATGAGTTGAATCTGGATCTTGCTGAGGTGTTGTCTCAAATTCGCGAAGGTGAAAAGCAGGATGAGACTTATGATGAGATCTTGAAGCAACATGATGTGACAACACTCTCTGGCCTTGAAGAATTGAGATATTCATATAAAGAGCTTCAAGATTGGGTAAAATGTCGTCTTAATGATCTCGAGGTATCAGAATATTTGATATTTCTTGCTAAGAAGCCGATGGTGGGGGTTAAAGAGAAATCTACATAA 519 0.3911 MGRRKIEIEKVKDPKIRQVTFSKRRTGLFNKANELSILCGAEVAIVVFSPGNKPYSFGHLGVDVVAAKYLQQDHESSDSERDPSYDASNMNELNLDLAEVLSQIREGEKQDETYDEILKQHDVTTLSGLEELRYSYKELQDWVKCRLNDLEVSEYLIFLAKKPMVGVKEKST 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02954 172 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre8g02954 172 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre8g02954 172 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre8g02954 172 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre8g02954 172 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Trre8g02954 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre8g02954 172 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Trre8g02954 172 Coils Coil 90 110 - -
Trre8g02954 172 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Trre8g02954 172 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre8g02954 172 CDD MADS 2 59 - -
Trre8g02954 172 PANTHER MADS BOX PROTEIN 3 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02954 Trre-Chr8 25946637 25947155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02954 1 162 Type I MADS-box Gene Family AT2G34440 41.279 1.05e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g02954 SRF-TF 3.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02954 - - mtr:11439559 226.483