Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02942 ATGCTTTCGAGAATAGAATACATGCATTCCAAGGGATTTTTGCATAGCGACATAAAACCAGATAACTTTCTAATGGGTATTAGGAGGAAATCAAGTCAAATTTATATTACTGATTTCGGACTAGGAAAAAGATATAAGGATCCCAAAACAAACAAGCATATTCCTTACAGAGAGAATAAAAATTTAACCGGGACAGCACGATACGCAAGTTGCAATACTCACTTAGGAATTGAACAAAGTCGTCGTGATGATTTGGAGTGTATTGGCTATGTTCTTATGTACTTCTTAAGAGGAAGCCTTCCTTGGCAGGTTATGGCAGCCTCAAATCATAGTCCAGGTTTACAACTTTCAAATTCTTTAAATACTACTATAAATCAACAACAAGGAGAGAGACCCTGA 399 0.3634 MLSRIEYMHSKGFLHSDIKPDNFLMGIRRKSSQIYITDFGLGKRYKDPKTNKHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLECIGYVLMYFLRGSLPWQVMAASNHSPGLQLSNSLNTTINQQQGERP 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02942 132 Gene3D Transferase(Phosphotransferase) domain 1 1 126 - -
Trre8g02942 132 PANTHER CASEIN KINASE-RELATED 1 104 - -
Trre8g02942 132 SUPERFAMILY Protein kinase-like (PK-like) 1 104 IPR011009 -
Trre8g02942 132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 13 25 IPR008271 GO:0004672|GO:0006468
Trre8g02942 132 Pfam Protein kinase domain 2 106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02942 132 ProSiteProfiles Protein kinase domain profile. 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02942 Trre-Chr8 25655272 25658031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02942 1 102 MAP Kinase Kinase Kinase AT2G32510 28.431 1.92e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre8g02942 Pkinase 5.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02942 K08960 - gmx:100792736 194.126