Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02904 ATGTCAATGTCCGGTGGCGCTGGAGCTTCCGACAGTGGTTCGCGGAGGGAGGCTGCCGGAACACCGAGTCGGCCGCCGTTGAAGCGTCATCTGGCTTTTGTCTCCACGAGGCCACCGTTTGCACCTACGGATGAGTATCATAGTTTCGCCGCCGTCGATTCTAGGAAAGTCCCCGATCACGTTACTGAAGCCGTCATTGTTAGATCTCCGCTCATAAAGCGGAAGAATGGAATGAATGAAAGCCAAGGAGAATCACAAAAGTGGAGTAACAGCCCTGGATACAATAATGTAACTAATAGCCCGTTTAAAACTCCTTTGTCTGCAAAAGAGGGAAGGACACACAAGTCAAGGGTATCCAAAGAAGGCAGATCATGTCCTCAAACACCCATCTCAAACGCTGGTTCCCCTTCTCCGCTTACTCCTGCCGGCAGCTGTCGATATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGATCAAGCATGCAGAGGATGGCATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATACGATATAACTAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAATATCAAGAACAGAATACTTTGGAAAGGAATTGAATCTTCTACTCCTGGCAATGTGGATGGTGATATCAATATGCTTAAGTCAGAAGTTGAAAAACTTTCTTTGGAAGAGCAGAGACTAGATGATAAAATAAGGGAAATGCAAGAAAAGCTGAGAAGTTTGAGTGAAGATGAAAATAACCAGAAGTTCCTTTTTGTGACTGAGGAAGATATTAAGGGCCTACCTTGCTTCCAGAATGAAACTTTGATAGCAATCAAAGCTCCGCATGGAACCACCTTGGAAGTCCCCGATCCTGAGGAAGCCGTTGACTATCTACAGCGGAGATATAGAATCATTCTTAGGAGCACAATGGGTCCTATCGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAATGCTGCTCAGCCCCCGACGAGCTTAGCTCTTGCTTCAAGTTCAGGGTCTACTGAGCAACAAGTGACAGAAATGGTTCCTGCTGAATGCAGTGGAAACGGACTTGATCCTCAAGCTCTCCTCTCTTCTCAGGAATACTCTGATTTAAATGTTTCACAAGAGCTTGCTGGGGGCATGATGAAGATAGTCCCTTCAGATGCTGATAATGATGCTGATTATTGGCTTCTATCGGATGCTGAAGTTAGCATAACAGATATGTGGAGAACAGATTCTAGTGTTGATTGGAGTGCTGTGGACATGCTTCATCCTGACTTTGAAATGATTGCGAGGCCACAAACTCCATCGCCTGTACTTGCAGAAGCACCATCGACTGTAGCTAACCCTAATCAGAGGTGA 1404 0.4466 MSMSGGAGASDSGSRREAAGTPSRPPLKRHLAFVSTRPPFAPTDEYHSFAAVDSRKVPDHVTEAVIVRSPLIKRKNGMNESQGESQKWSNSPGYNNVTNSPFKTPLSAKEGRTHKSRVSKEGRSCPQTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKNIKNRILWKGIESSTPGNVDGDINMLKSEVEKLSLEEQRLDDKIREMQEKLRSLSEDENNQKFLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYLQRRYRIILRSTMGPIDVYLISQFEEKFEEINAAQPPTSLALASSSGSTEQQVTEMVPAECSGNGLDPQALLSSQEYSDLNVSQELAGGMMKIVPSDADNDADYWLLSDAEVSITDMWRTDSSVDWSAVDMLHPDFEMIARPQTPSPVLAEAPSTVANPNQR 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02904 467 MobiDBLite consensus disorder prediction 122 141 - -
Trre8g02904 467 Gene3D - 140 213 IPR036388 -
Trre8g02904 467 SMART E2F_TDP_2 146 211 IPR003316 GO:0005667|GO:0006355
Trre8g02904 467 Coils Coil 162 182 - -
Trre8g02904 467 MobiDBLite consensus disorder prediction 73 141 - -
Trre8g02904 467 FunFam E2F transcription factor 1 140 213 - -
Trre8g02904 467 MobiDBLite consensus disorder prediction 75 106 - -
Trre8g02904 467 PANTHER TRANSCRIPTION FACTOR E2F 83 429 IPR015633 GO:0000978|GO:0006357
Trre8g02904 467 Coils Coil 224 261 - -
Trre8g02904 467 CDD E2F_DD 227 328 IPR032198 GO:0046983
Trre8g02904 467 SUPERFAMILY "Winged helix" DNA-binding domain 146 209 IPR036390 -
Trre8g02904 467 Pfam E2F/DP family winged-helix DNA-binding domain 148 211 IPR003316 GO:0005667|GO:0006355
Trre8g02904 467 SUPERFAMILY E2F-DP heterodimerization region 224 328 IPR037241 -
Trre8g02904 467 Pfam E2F transcription factor CC-MB domain 227 327 IPR032198 GO:0046983
Trre8g02904 467 Gene3D - 218 328 - -
Trre8g02904 467 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02904 Trre-Chr8 25194568 25199108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02904 21 461 E2F-DP Transcription Factor Family AT2G36010 56.531 2.49e-169 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre8g02904 E2F_CC-MB 1.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02904 K06620 - gmx:100811762 702.59