Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02898 ATGTTTCTTTCATGTCAAAAACACACCCTTTACTTTCATTCTTTTTCTTCTATCCACTCCTCCAAGAACCCAAAACTCACCATTATCATCAATTGTCATAACCCAAATGAACAACAACACAAAAACCACCCTATTCCTCGAACACAAAATTCAAAATCAACATCATTTCTCATTCAACACCTTTTACAAAAAAACAACAACAACAACACTAACCCTTCACCCACTGAGTTACAAGACTCAACACCCCATGAAGAAAAAATCAAACTTTTAGAACTTTCTTTAGTAAGAAAAAGAACCCCTCAATTTCCTGGTTCAATTTATGCTCAATCTCCTAGTGATCCTGATGTGGGTTCTTCTCTTCCTCCTCTTCGTACCCTTTTTCGATCGGGTGATCAAGAAGAGGAAGAGATGATTATGCAAGCTCTTGAGATTCGTAGGAAGGTTACTCAAGAGGTTTTTAAAGATGCAATGCGAAATGGTAAATTTGGTATTACTTATAGTACTAATTTGGTTGATAGGTTGGGTGGTTTCATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTACCGGAATATTCCAACTCCACTTTTAATTTACGCGCCAAAACTGTTATTGAAGATTCACAGGTTGTGCCACTTATCAGATGGTTGAAGCATAATTCGCTATCGTATCCAGAGATAGCTAAGCTTATTTTGATGTCAAGAGGGAAACTTGAGTCCATAAGGAACCGTGTTGAGTGGTTAAAGTCGGTGCTGGTTAAGGGAGACTTTATTGGTCGTGCAATGTTGAAAAGTGGAGATGATTTTTTGCTGCGGAGCGATGCGGAGTTGGATGAGATTGTTGAGTATTTAGTGTCGAATGGAGTTAGGAGGGAATGGATGGGTTTTGTTTTGAGTCGGTGTCCGAAGTTGTTATCTTATAGCTTGGAAGAAGTGAAGACTCGCGTGCAGTTCTATCTGGATATGGGTTTAGATGAGAAGGATTTTGGCACCATGGTTTTTGATTTTTCTAAAGCACTCGGTCACTATACTCTCGAAGAAATGCACCGAAAGGTTGATTACTTGAAAGAATTCGGACTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTAGGCCAGAATTGATGGCGTGCAGTATTGAAGAACGGTGGCAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGATGGGATGAAGAGAATGCTTATCATTAAACCTATGGTCTTTTGCATTGACTTGGAGATGAATATTGTGCCAAAGGATTTAGGGGTTCGAAATGACGGGATTGCCAATATGCTTGTCAAATTTCCTCCTCTACTCACTTACAGCCTGTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAATCTATTGGAAAGGTTATTGCTCTTGGACCTCAACTCTTGGGATGCAGCATAGTACATAAGCTCGAAGTAAATGTAAAATATTATTTGTCTCTTGGCATACGTCTTCGGCAACTTGGTGAAATGATTGCTGATTTTCCGATGCTGCTCAGATACAATACAGATGTTCTCCGTCCTAAGTATACGTATTTGCGGAGAACCATGGTTCGAACTTTGCAAGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTCGAGGGTCGAATTATCCCAAGACATAAGGTTCTGGTGGAGAAGCAGATTAACGTCAAGTTAAATTGCATGTTAGCTTGCACAGATGAAGAATTTGACAAAATGGTCAAGAATATAATTAGAAAACGCAACACATTTCAATCTTCTTCCATGAAGGCGAATACCGCTCATCCCCAATCTCTCATTACCGGGGATATTACTACCCCCGAGACGTAA 1875 0.3947 MFLSCQKHTLYFHSFSSIHSSKNPKLTIIINCHNPNEQQHKNHPIPRTQNSKSTSFLIQHLLQKNNNNNTNPSPTELQDSTPHEEKIKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLRTLFRSGDQEEEEMIMQALEIRRKVTQEVFKDAMRNGKFGITYSTNLVDRLGGFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPEIAKLILMSRGKLESIRNRVEWLKSVLVKGDFIGRAMLKSGDDFLLRSDAELDEIVEYLVSNGVRREWMGFVLSRCPKLLSYSLEEVKTRVQFYLDMGLDEKDFGTMVFDFSKALGHYTLEEMHRKVDYLKEFGLESKDVGKLLAFRPELMACSIEERWQPLVKYLYYYGITRDGMKRMLIIKPMVFCIDLEMNIVPKDLGVRNDGIANMLVKFPPLLTYSLYKKIRPVVIFLMTKAGVTEESIGKVIALGPQLLGCSIVHKLEVNVKYYLSLGIRLRQLGEMIADFPMLLRYNTDVLRPKYTYLRRTMVRTLQDLIEFPRFFSYSLEGRIIPRHKVLVEKQINVKLNCMLACTDEEFDKMVKNIIRKRNTFQSSSMKANTAHPQSLITGDITTPET 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02898 624 Gene3D Transcription termination factor 3, mitochondrial 359 599 IPR038538 -
Trre8g02898 624 PANTHER CGI-12 PROTEIN-RELATED 272 370 IPR003690 GO:0003690|GO:0006355
Trre8g02898 624 MobiDBLite consensus disorder prediction 64 78 - -
Trre8g02898 624 MobiDBLite consensus disorder prediction 64 83 - -
Trre8g02898 624 SMART mt_12 472 503 IPR003690 GO:0003690|GO:0006355
Trre8g02898 624 SMART mt_12 540 571 IPR003690 GO:0003690|GO:0006355
Trre8g02898 624 SMART mt_12 332 363 IPR003690 GO:0003690|GO:0006355
Trre8g02898 624 SMART mt_12 262 292 IPR003690 GO:0003690|GO:0006355
Trre8g02898 624 SMART mt_12 508 538 IPR003690 GO:0003690|GO:0006355
Trre8g02898 624 SMART mt_12 297 327 IPR003690 GO:0003690|GO:0006355
Trre8g02898 624 SMART mt_12 435 467 IPR003690 GO:0003690|GO:0006355
Trre8g02898 624 SMART mt_12 368 399 IPR003690 GO:0003690|GO:0006355
Trre8g02898 624 Pfam mTERF 235 419 IPR003690 GO:0003690|GO:0006355
Trre8g02898 624 Pfam mTERF 364 585 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02898 Trre-Chr8 25115283 25118015 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre8g02898 mTERF 2.3e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02898 K15032 - zju:107426883 795.808