Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02897 ATGTTTCTTTCATGTCAAAAACACACCCTTTACTTTCATTCTTTTTCTTCTATCCACTCCTCCAAGAACCCAAAACTCACCATTATCATCAATTGTCATAACCCAAATGAACAACAACACAAAAACCACCCTATTCCTCGAACACAAAATTCAAAATCAACATCATTTCTCATTCAACACCTTTTACAAAAAAACAACAACAACAACACTAACCCTTCACCCACTGAGTTACAAGACTCAACACCCCATGAAGAAAAAATCAAACTTTTAGAACTTTCTTTAGTAAGAAAAAGAACCCCTCAATTTCCTGGTTCAATTTATGCTCAATCTCCTAGTGATCCTGATGTGGGTTCTTCTCTTCCTCCTCTTCGTACCCTTTTTCGATCGGGTGATCAAGAAGAGGAAGAGATGATTATGCAAGCTCTTGAGATTCGTAGGAAGGTTACTCAAGAGGTTTTTAAAGATGCAATGCGAAATGGTAAATTTGGTATTACTTATAGTACTAATTTGGTTGATAGGTTGGGTGGTTTCATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTACCGGAATATTCCAACTCCACTTTTAATTTACGCGCCAAAACTGTTATTGAAGATTCACAGGTTGTGCCACTTATCAGATGGTTGAAGCATAATTCGCTATCGTATCCAGAGATAGCTAAGCTTATTTTGATGTCAAGAGGGAAACTTGAGTCCATAAGGAACCGTGTTGAGTGGTTAAAGTCGGTGCTGGTTAAGGGAGACTTTATTGGTCGTGCAATGTTGAAAAGTGGAGATGATTTTTTGCTGCGGAGCGATGCGGAGTTGGATGAGATTGTTGAGTATTTAGTGTCGAATGGAGTTAGGAGGGAATGGATGGGTTTTGTTTTGAGTCGGTGTCCGAAGTTGTTATCTTATAGCTTGGAAGAAGTGAAGACTCGCGTGCAGTTCTATCTGGATATGGGTTTAGATGAGAAGGATTTTGGCACCATGGTTTTTGATTTTTCTAAAGCACTCGGTCACTATACTCTCGAAGAAATGCACCGAAAGGTTGATTACTTGAAAGAATTCGGACTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTAGGCCAGAATTGATGGCGTGCAGTATTGAAGAACGGTGGCAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGATGGGATGAAGAGAATGCTTATCATTAAACCTATGGTCTTTTGCATTGACTTGGAGATGAATATTGTGCCAAAGGTAAAGTTTTTTCAGGATTTAGGGGTTCGAAATGACGGGATTGCCAATATGCTTGTCAAATTTCCTCCTCTACTCACTTACAGCCTGTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAATCTATTGGAAAGGTTATTGCTCTTGGACCTCAACTCTTGGGATGCAGCATAGTACATAAGCTCGAAGTAAATGTAAAATATTATTTGTCTCTTGGCATACGTCTTCGGCAACTTGGTGAAATGATTGCTGATTTTCCGATGCTGCTCAGATACAATACAGATGTTCTCCGTCCTAAGTATACGTATTTGCGGAGAACCATGGTTCGAACTTTGCAAGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTCGAGGGTCGAATTATCCCAAGACATAAGGTTCTGGTGGAGAAGCAGATTAACGTCAAGTTAAATTGCATGTTAGCTTGCACAGATGAAGAATTTGACAAAATGGTCAAGAATATAATTAGAAAACGCAACACATTTCAATCTTCTTCCATGAAGGCGAATACCGCTCATCCCCAATCTCTCATTACCGGGGATATTACTACCCCCGAGACGTAA 1890 0.3937 MFLSCQKHTLYFHSFSSIHSSKNPKLTIIINCHNPNEQQHKNHPIPRTQNSKSTSFLIQHLLQKNNNNNTNPSPTELQDSTPHEEKIKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLRTLFRSGDQEEEEMIMQALEIRRKVTQEVFKDAMRNGKFGITYSTNLVDRLGGFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPEIAKLILMSRGKLESIRNRVEWLKSVLVKGDFIGRAMLKSGDDFLLRSDAELDEIVEYLVSNGVRREWMGFVLSRCPKLLSYSLEEVKTRVQFYLDMGLDEKDFGTMVFDFSKALGHYTLEEMHRKVDYLKEFGLESKDVGKLLAFRPELMACSIEERWQPLVKYLYYYGITRDGMKRMLIIKPMVFCIDLEMNIVPKVKFFQDLGVRNDGIANMLVKFPPLLTYSLYKKIRPVVIFLMTKAGVTEESIGKVIALGPQLLGCSIVHKLEVNVKYYLSLGIRLRQLGEMIADFPMLLRYNTDVLRPKYTYLRRTMVRTLQDLIEFPRFFSYSLEGRIIPRHKVLVEKQINVKLNCMLACTDEEFDKMVKNIIRKRNTFQSSSMKANTAHPQSLITGDITTPET 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02897 629 Gene3D Transcription termination factor 3, mitochondrial 359 602 IPR038538 -
Trre8g02897 629 Pfam mTERF 227 359 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 Pfam mTERF 341 590 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 SMART mt_12 440 472 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 SMART mt_12 332 363 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 SMART mt_12 262 292 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 SMART mt_12 477 508 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 SMART mt_12 297 327 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 SMART mt_12 368 399 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 SMART mt_12 404 435 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 SMART mt_12 513 543 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 SMART mt_12 545 576 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 PANTHER CGI-12 PROTEIN-RELATED 272 371 IPR003690 GO:0003690|GO:0006355
Trre8g02897 629 MobiDBLite consensus disorder prediction 64 78 - -
Trre8g02897 629 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02897 Trre-Chr8 25115283 25118015 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre8g02897 mTERF 4.7e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02897 K15032 - zju:107426883 808.905