Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02895 ATGTCGTCGGAATCCACAGCCACATCAACTTCTCTCATGAGTTTGAAGGTACTCGTTCTAGCAGGAATTTTCCTCATCATCGTTATAATAATCGTGCTTTTGATCTTCCTCTGTTTTCGAAGTAACCGAAGCTGCAATAAACGGAAGCTGTTACCGAAGCTACACAGCTCCGGAACCACTCCTCTGGTTTCTAAGGAAATCGCTGTGGTTAAGGAAATTGATCTCACGCGCTCCACTGAGCAAACGCGGATTGAGATTCTTGATGAGAAGAAGGAGGCGGAGATTAAGGTTGAAATTGGAGGAGTTAGGAAAGGTGACGTGTCAGGTGGTGGGGTCCACATGGAGGAGGATCCAAATATAGGGTGGGGTCGGTGGTATAGTTTGAAGGAAGTGGAAATAGCGACACGTGGATTTTCTGAAGGGAATGTGATTGGTGAAGGAGGGTATGGTGTTGTGTATAGAGGTGTATTGCAAGATTCTGTCGTGGCAGTGAAGAATCTTCACAACAACAAGGGTCAAGCTGAGAAGGAGTTTAAGGTGGAGGTTGAAGCCATAGGCAAAGTAAGGCATAAGAATTTAGTTCGTTTAGTAGGATATTGTGCAGAAGGTGCTCGAAGGATGCTTGTTTATGAATATGTTGAAAATGGAAACTTGGAGCAATGGCTGCATGGTAATGTAGGACCAGTTAGCCCCTTGACATGGGATATTCGAATGAAGATTGCAATTGGAACTGCCAAAGGGCTAAGCTATTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACCGAGATATAAAATCTAGCAACATCCTTTTGGACAAAAATTGGAATGCCAAAGTTTCGGATTTTGGACTTGCCAAACTCTTAGGATCTGAGAAAACCCACGTAACCACACGTGTAATGGGAACATTTGGATATGTTTCGCCTGAGTACGCAAGCACAGGTATGCTTAATGAGCGTAGCGATGTTTATAGTTTTGGAGTTCTACTCATGGAAATAATCACAGGAAGAAGCCCTATCGATTATTCAAAACCACCCGGAGAGATGAATTTGGTTGATTGGTTTAAGGGAAAGGTAGCAAGTCGCCGCAGTGACGATCTAGTTGATCCTTTGATTGAGATTCCACCTTCTCCAAGATCTCTGAAGCGGGTTTTACTGATCTGCCTACGCTGTATAGATCTGGATGTGATCAAGAGACCGAAGATGGGTCAAATCGTTCATATGCTTGAGTCAGATGATTTCCCCTTTCGTTCTGAGCTACGTACAATTAGGGACAAAAATTCTACGCCATCTCAAGCAGATGTTTCCATCAAAGTTCCATATCAAAGAAATCTTGCAGAACCTGCAGAAAAATCAACACATAGATGA 1365 0.433 MSSESTATSTSLMSLKVLVLAGIFLIIVIIIVLLIFLCFRSNRSCNKRKLLPKLHSSGTTPLVSKEIAVVKEIDLTRSTEQTRIEILDEKKEAEIKVEIGGVRKGDVSGGGVHMEEDPNIGWGRWYSLKEVEIATRGFSEGNVIGEGGYGVVYRGVLQDSVVAVKNLHNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRMLVYEYVENGNLEQWLHGNVGPVSPLTWDIRMKIAIGTAKGLSYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRSPIDYSKPPGEMNLVDWFKGKVASRRSDDLVDPLIEIPPSPRSLKRVLLICLRCIDLDVIKRPKMGQIVHMLESDDFPFRSELRTIRDKNSTPSQADVSIKVPYQRNLAEPAEKSTHR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02895 454 SUPERFAMILY Protein kinase-like (PK-like) 121 409 IPR011009 -
Trre8g02895 454 CDD STKc_IRAK 144 409 - -
Trre8g02895 454 SMART serkin_6 138 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02895 454 Pfam Protein tyrosine and serine/threonine kinase 141 408 IPR001245 GO:0004672|GO:0006468
Trre8g02895 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Trre8g02895 454 ProSiteProfiles Protein kinase domain profile. 138 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02895 454 ProSitePatterns Protein kinases ATP-binding region signature. 144 165 IPR017441 GO:0005524
Trre8g02895 454 Gene3D Phosphorylase Kinase; domain 1 112 212 - -
Trre8g02895 454 Gene3D Transferase(Phosphotransferase) domain 1 213 420 - -
Trre8g02895 454 FunFam Probable serine/threonine-protein kinase At1g01540 118 212 - -
Trre8g02895 454 FunFam Putative receptor-like serine/threonine-protein kinase 213 423 - -
Trre8g02895 454 PANTHER OS01G0323000 PROTEIN 4 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02895 Trre-Chr8 25101934 25105319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02895 87 409 Receptor kinase-like Gene Family AT4G02010 45.122 1.24e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre8g02895 PK_Tyr_Ser-Thr 7.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02895 - - tpra:123913149 793.112