Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02889 ATGTCTATATGGTTGAAGCATAATTCGCTATCGTATCCAGAGATAGCTAAGCTTATTTTGATGTCAAGAGGGAAACTTGAGTCCATAAGGAACCATGTTGAGTGGTTGAAGTCAGTGCTGGTTAAGGGAGACTTTATTGGTGGTGCAATGTTGAAGAGTGGAGATGATTTTTTGCTACGGAGCGATGTGGAGTTGGATGAGATTGTTGAGTATTTAATGTCTAATGGAGTTAGGAGGGAATGGAGGGGTTCTGTTTTGAGTCGGTGTCCAAAGTTGTTATCATATAGCTTGGAAGAATTGAAGACTCGTGTGCAGTTCTATCTGGATATGGGTTTAGATGAGAAGGATTTTGGCACCATGGTTTTTGATTTTTCTAAAGCACTCGGTCACTATACTCTCGAAGAAATGCACCGAAAGGTTGATTACTTGAAAGAATTCGGACTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTAGGCCAGAATTGATGGCGTGCAGCATTGAAGAACGGTGGCAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGATGGGATGAAGAGAATGCTTATCATTAAACCTATGGTCTTTTGCATTGACTTGGAGATGAATATTGTGCCAAAGGTAAAGTTTTTTCAGGACTTAGGGGTTCGAAATGACGGGATTGCCAACATGCTTGTCAAATTTCCTCATCTACTCACTTACAGCTTGTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCCGGAGTCACTGAAGAATCTATTGGAAAGGTTATTGCTCTTGGACCTCAACTCTTGGGATGCAGCATAGTACATAAGCTGGAAGTAAATGTAAAATATTATTTGTCTCTTGGCATACATCTTCGGCAACTTGGTGAAATGATTGCTGATTTCCCGATGCTGCTCAGATACAATACAGATGTTCTCCGTCCTAAGTATACATATTTGCGGAGAACCATGGTTTGA 987 0.4063 MSIWLKHNSLSYPEIAKLILMSRGKLESIRNHVEWLKSVLVKGDFIGGAMLKSGDDFLLRSDVELDEIVEYLMSNGVRREWRGSVLSRCPKLLSYSLEELKTRVQFYLDMGLDEKDFGTMVFDFSKALGHYTLEEMHRKVDYLKEFGLESKDVGKLLAFRPELMACSIEERWQPLVKYLYYYGITRDGMKRMLIIKPMVFCIDLEMNIVPKVKFFQDLGVRNDGIANMLVKFPHLLTYSLYKKIRPVVIFLMTKAGVTEESIGKVIALGPQLLGCSIVHKLEVNVKYYLSLGIHLRQLGEMIADFPMLLRYNTDVLRPKYTYLRRTMV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02889 328 Gene3D Transcription termination factor 3, mitochondrial 155 328 IPR038538 -
Trre8g02889 328 PANTHER CGI-12 PROTEIN-RELATED 152 327 IPR003690 GO:0003690|GO:0006355
Trre8g02889 328 SMART mt_12 190 221 IPR003690 GO:0003690|GO:0006355
Trre8g02889 328 SMART mt_12 118 149 IPR003690 GO:0003690|GO:0006355
Trre8g02889 328 SMART mt_12 83 113 IPR003690 GO:0003690|GO:0006355
Trre8g02889 328 SMART mt_12 299 328 IPR003690 GO:0003690|GO:0006355
Trre8g02889 328 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Trre8g02889 328 SMART mt_12 48 78 IPR003690 GO:0003690|GO:0006355
Trre8g02889 328 SMART mt_12 226 258 IPR003690 GO:0003690|GO:0006355
Trre8g02889 328 SMART mt_12 154 185 IPR003690 GO:0003690|GO:0006355
Trre8g02889 328 Pfam mTERF 13 144 IPR003690 GO:0003690|GO:0006355
Trre8g02889 328 Pfam mTERF 127 327 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02889 Trre-Chr8 25018040 25019630 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre8g02889 mTERF 6.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02889 K15032 - vvi:100852464 506.138