Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02887 ATGGCTTCCGCAGATGTTGAGTACCGTTGCTTCGTTGGTGGTCTTGCATGGGCCACTGACAGTGAAGCTCTCGAGAAAGCCTTCTCTCAGTACGGCGAGGTCATCGATTCGAAGATTATTAACGATCGTGAGACTGGAAGGTCAAGAGGATTCGGATTTGTGACATTTGCGACTGAGCAATCCATGAGAGATGCGATCGAAGGAATGAACGGTCAGGACATGGGCGGACGTAACATCACCGTGAACGAAGCTCAAAGCCGTGGAAGTGGTGGTGGTGGAGGAGGTCGTGGTGGCGGTGGATACAGTGGAGGAGGTGGTGGTGGCTATGGTGGTCGCCGTGAAGGTGGATACAGCAGAGGAGGTGGTGGTGGAGGATATGGTGGTGGTGGTGGTGGTTACGGTGGTGGTGGAAGGGATCGTTCATATGGTGGAAACGATGGTGGCTACTCCCGTGGAGGCGGTGGTGGTAGTGGAAACTGGTAG 483 0.5466 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEVIDSKIINDRETGRSRGFGFVTFATEQSMRDAIEGMNGQDMGGRNITVNEAQSRGSGGGGGGRGGGGYSGGGGGGYGGRREGGYSRGGGGGGYGGGGGGYGGGGRDRSYGGNDGGYSRGGGGGSGNW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02887 160 PANTHER GEO13361P1-RELATED 3 154 - -
Trre8g02887 160 SMART rrm1_1 9 82 IPR000504 GO:0003723
Trre8g02887 160 MobiDBLite consensus disorder prediction 121 160 - -
Trre8g02887 160 FunFam Glycine-rich RNA-binding protein GRP1A 2 118 - -
Trre8g02887 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Trre8g02887 160 Gene3D - 2 103 IPR012677 -
Trre8g02887 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Trre8g02887 160 SUPERFAMILY RNA-binding domain, RBD 8 125 IPR035979 GO:0003676
Trre8g02887 160 CDD RRM2_NsCP33_like 9 84 - -
Trre8g02887 160 MobiDBLite consensus disorder prediction 70 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02887 Trre-Chr8 25012203 25013004 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02887 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 31.646 3.23e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02887 - K13195 ccaj:109800369 157.147