Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02884 ATGGCCTCTTCTGATGTTGAATACAGGTGCTTCGTCGGCGGTCTTGCCTGGGGCACAGACAGCGACGCTCTTGCCAAAGCCTTTTCCTCCTACGGCGAAATCACTGATTCCAAGGTTATTAATGATCGTGAAACTGGAAGATCGAGAGGTTTTGGATTTGTGACTTTTGCTACGGAGAAATCGATGAGAGATGCAATTGAAGGTATGAACGGTCAAGATATTGATGGCCGTAATATCACTGTGAATGAAGCTCAGTCCCGTAGTAGAGGTGGAGGTGGTGGTGGTGGATATGGTGGAGGTGGCGGTGGATATGGCGGCGGTGGTCGTCGTGAAGGTGGATACAACAGAAGCAGTGGTGGTGGAGGTTATGGTAGTGGAGGAGGAGGTGGTTATGGTGGTGGTAGGGATCGTGGATATGGTGGTGGTGGTGACCGTGGATATGGTGGTGGTGGTGGTGATCGTGGATATGGTGGAGGTGGCTACTCACGCAGTGGTGGTGGTGGTGGTGGAAGCGGTGGAAACTGGAGGGATAGGGATTAG 540 0.5222 MASSDVEYRCFVGGLAWGTDSDALAKAFSSYGEITDSKVINDRETGRSRGFGFVTFATEKSMRDAIEGMNGQDIDGRNITVNEAQSRSRGGGGGGGYGGGGGGYGGGGRREGGYNRSSGGGGYGSGGGGGYGGGRDRGYGGGGDRGYGGGGGDRGYGGGGYSRSGGGGGGSGGNWRDRD 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02884 179 FunFam Glycine-rich RNA-binding protein GRP1A 2 113 - -
Trre8g02884 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Trre8g02884 179 PANTHER GEO13361P1-RELATED 3 166 - -
Trre8g02884 179 MobiDBLite consensus disorder prediction 69 179 - -
Trre8g02884 179 SMART rrm1_1 9 82 IPR000504 GO:0003723
Trre8g02884 179 Gene3D - 2 105 IPR012677 -
Trre8g02884 179 PRINTS Eggshell protein signature 148 166 - -
Trre8g02884 179 PRINTS Eggshell protein signature 13 24 - -
Trre8g02884 179 PRINTS Eggshell protein signature 118 128 - -
Trre8g02884 179 PRINTS Eggshell protein signature 92 107 - -
Trre8g02884 179 SUPERFAMILY RNA-binding domain, RBD 8 115 IPR035979 GO:0003676
Trre8g02884 179 CDD RRM2_NsCP33_like 9 84 - -
Trre8g02884 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02884 Trre-Chr8 24979769 24980592 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02884 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 3.22e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02884 - K13195 psat:127105342 157.918