Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02880 ATGTCGTCTGCAGATGTTGAATACCGATGCTTCGTCGGCGGTCTTGCATGGGCCACCGACAGCGACGCTCTCGAGAAAGCTTTCTCTTCCTACGGCGAGATCGTTGATTCGAAGATCATTAACGATCGTGAGACTGGAAGGTCAAGAGGATTTGGATTTGTGACATTTGCTAATGAGAAATCAATGAGAGATGCTATTGAAGGAATGAACGGTCAGAACATGGATGGCCGTAACATTACTGTTAACGAGGCACAAAACAGATCCAGTGGTAGTGGAGGAGGTGGTGGTGGTGGTTATGGTGGTGGTCGTCGTGAAGGTGGATACAATAGAAGCAGTGGTGGAGGTGGAGGATATGGAGGAGGAGGTGGTGGTGGTTATGGTGGTGGTAGGGACCGTGGTTATGGTGATGACGGTGGTTCCCGTTATTCTTCTCGCGGTGGCAGCGGTGGTGGCGGAAACTGGAGGGAGTAG 471 0.5117 MSSADVEYRCFVGGLAWATDSDALEKAFSSYGEIVDSKIINDRETGRSRGFGFVTFANEKSMRDAIEGMNGQNMDGRNITVNEAQNRSSGSGGGGGGGYGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDGGSRYSSRGGSGGGGNWRE 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02880 156 SMART rrm1_1 9 82 IPR000504 GO:0003723
Trre8g02880 156 MobiDBLite consensus disorder prediction 68 156 - -
Trre8g02880 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Trre8g02880 156 PANTHER GEO13361P1-RELATED 4 148 - -
Trre8g02880 156 MobiDBLite consensus disorder prediction 73 92 - -
Trre8g02880 156 FunFam Glycine-rich RNA-binding protein GRP1A 2 112 - -
Trre8g02880 156 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Trre8g02880 156 Gene3D - 2 104 IPR012677 -
Trre8g02880 156 CDD RRM2_NsCP33_like 9 84 - -
Trre8g02880 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02880 Trre-Chr8 24934338 24935037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02880 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 39.241 1.32e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02880 - K13195 ccaj:109800369 161.77