Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02873 ATGTTACACTGTCTGAACACTTCGGGAAATCTAGTCGGAGGAGGAACAATTTCCGACATGACAGTGTTTGAAAGACAAAGAGAAAGAATCAAGTTTCAAAATGAACACGAATTCTCTTCTTCACATCAACAATTTATGTTGCTTGGTTGCGATTCCGCTCTCGGCGAAATCGTAACTAACTCAATGAAACCTGATCCGGATTATGAAGATGAAACTGTTAAGAAAAGGAAAATTGATAATAAGATTGATATGAATTCAAAAGAAAAGAGGATCAAAGTGTGTGTAGAAGAAAGTGAATCAAAAATCATAGAGCAAAAAAAAGGACAGAAGAATGCAAAGTTGAACAATGGAAACAAAAATAAGAGAGAAAATTGTGATGATAATAATTCCAAGGAAAATTCGAAAGGGTCTGAGGTTCAGAATCAGAAGCCTGATTACATTCATGTTCGTGCTCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATAAGTGAGAGGATGAAATATTTGCAAGATTTAGTGCCAGGATGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCGATGAAATTAGCAGCTGTAAACCCAAGACTTGACTTCAACATTGATGAATTGTTTGCCAAAGAGGTGTTTACTCAAAATTTTCCAACCATAGGGATGCCATCAGAAATGACTAACCCTGCATATCTTCAATTCAATTCAGCGCAACAACTAGTTTCATGTTGTGGCGGATTAATAAACAATATGGGAATAACCCCTCCCGAAATTGGACTTCGTAGGAACATTAATGCACCAACATCGGCATCTTTACCCGAAATCTTTCTTGACACATCAGTTTTCACTCATATCCTACCCTCCTCAACTTGGGAAGGTGATTTTCAAAATCTTCATAATGTGGATTTTGATCAAGGACGATCAATATCATTTCCTTCTCAGCCATTCACAGGCATGGTTGAAGCTAGCAATATGAAGATGGAGATGTAA 1059 0.372 MLHCLNTSGNLVGGGTISDMTVFERQRERIKFQNEHEFSSSHQQFMLLGCDSALGEIVTNSMKPDPDYEDETVKKRKIDNKIDMNSKEKRIKVCVEESESKIIEQKKGQKNAKLNNGNKNKRENCDDNNSKENSKGSEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFTQNFPTIGMPSEMTNPAYLQFNSAQQLVSCCGGLINNMGITPPEIGLRRNINAPTSASLPEIFLDTSVFTHILPSSTWEGDFQNLHNVDFDQGRSISFPSQPFTGMVEASNMKMEM 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02873 352 SMART finulus 161 211 IPR011598 GO:0046983
Trre8g02873 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 224 IPR036638 GO:0046983
Trre8g02873 352 FunFam Basic helix-loop-helix transcription factor 152 224 - -
Trre8g02873 352 Gene3D - 152 226 IPR036638 GO:0046983
Trre8g02873 352 Pfam Helix-loop-helix DNA-binding domain 159 206 IPR011598 GO:0046983
Trre8g02873 352 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 262 IPR024097 GO:0006355
Trre8g02873 352 MobiDBLite consensus disorder prediction 105 145 - -
Trre8g02873 352 MobiDBLite consensus disorder prediction 116 133 - -
Trre8g02873 352 CDD bHLH_AtBPE_like 145 230 - -
Trre8g02873 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 205 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02873 Trre-Chr8 24870352 24873831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02873 19 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 47.279 5.14e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g02873 HLH 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02873 - - gmx:100794256 429.869