Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02829 ATGGGAGAGGTAGCGCATGGAGGTGGTTGTTGTCCTCCGATGGATCTATTCCGTTCGGAGCCGATGCAACTCATTCAGCTCATCATTCCCATCGAATCCGCTCACCGCACTGTTTCCTATCTCGGTGACCTTGGTCTCCTTCAGTTTAAAGATCTCAATTCAGAGAAGAGCCCTTTTCAACGGACTTATGCAGCTCAGATTAAACGATGTGGAGAGATGGCTCGTAAATTACGTTTTTTCAAGGAACAAATGATTAAGGCAGGTGTTTCGCCAAAAGGTTCCACAACAGAGTTTGATGCGAACATCGATAACATTGAGATAAAACTTACAGAAATTGAGTCAGAGTTAACTGAGATGAATGCAAATGGTGAAAAGTTGCAACGCACGTACAATGAACTTGTTGAGTACAAGCTTGTTCTGCAGAAGGCTGGTGACTTTTTCCACTCAGCTCAAAGCCGTGCCATAGAGGCGCAAAGAGAATATGAATCACGCCATCTGAGTGGGGAATCTATGGAAACACCTTTATTACAGGACCAAGAATTACCAGGTGATTCATCAAAGCCAGTTAAGTTGGGGTTTTTAGCAGGTCTTGTTCCCAGGGAAAAGTCGGTGGCATTTGAGAGAATTCTATTTCGTGCTACTAGAGGCAATGTATTTTTGAGGCAGACTGCTGTTGAGAATCCAGTCGCAGACCCTGTTTCTGGAGAAAAGACGGAGAAAAACGTTTTTGTCGTCTTTTATGCTGGTGAAAAAGTCAAAGGCAAGATTCTGAAAATCTGTGATGCCTTTGGTGCTAATCGATACCCGTTTGCTGAGGAACTTGGAAAACAAGCTCAAATGATTTCTGAGGTTTCTGGAAGACTTGCAGAATTGAAGACCACCATAGATGCTGGACTTTTGCACCGAGTTAACTTGCTGGAAAATATTGGGACTCAATACGAGCAATGGAATCTTTTGGTGAGGAAGGAGAAATCCATTCACCATACCCTGAACATGCTAAGCCTTGATGTGACTAAAAAGTGCCTTGTGGCTGAGGGGTGGAGTCCTGTTTTTGCAACAAAGCAGGTCCAGGACGCGTTAAAGCGGGCTGCAAAGGACTCTAATTCTCAAGTCAGTGCCATTTTGCAAGTTTTGCATACCAGGGAGTCACCACCTACCTACTTTCGCACGAACAAATTTACGTCTCCGTATCAAGGAATTATAGACTCATATGGGGTTGCCAAGTATCAAGAGGCAAATCCTACTGTGTTTACTGTAGTTACCTTTCCATTTCTTTTCGCCGTAATGTTTGGTGATTGGGGGCATGGAATATGTTTACTGCTTGCAGCTCTATATTTCATAATCAGGGAGAAGAAACTTTCTAGCCAGAAGCTTGATGACATCACGGAGATGACTTTTGGAGGTCGTTATATTATTTTCATGATGGCACTCTTCTCAATCTACACTGGCTTGATCTATAATGAGTTCTTTTCTGTCCCATTTGAACTCTTTGGCCCCTCTGCATATGAGTGTCGTGACCTTTCTTGCAGGGATTCTACAACAATAGGACTGATAAAAACGGGTCCTACTTACCCTTTTGGATTGGATCCTGTATGGCATGGTACACGTAGTGAATTGCCATTCCTGAACTCATTGAAAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTATAATGAGCTATTGCAATGCCAGGTTCTTCAAGAACAGCGTAAATGTATGGTTCCAATTTATTCCCCAGGTGATATTTCTTAACAGTCTATTCGGCTACCTATCCCTTCTTATTATTGTGAAGTGGTGCACGGGTTCTCAAGCTGATTTGTACCACGTAATGATCTACATGTTCCTGAGCCCAACAGATGATTTGGGTGAGAACCAACTCTTTGCGGGTCAGAAAAATCTTCAGCTTGTGCTTTTGCTTCTGGCCGGTGTTGCTGTGCCCTGGATGCTGTTGCCAAAACCTTTTATCTTGAAGAAGCAACATGAAGCTAGGCACGGGGATGAATCCTATGCACCACTTCCAAACACGGAGGAGAGCTTACAAGTGGAGTCAAATCATGATTCCCATGGTCACGAGGAGTTTGAGTTCAGTGAAATTTTTGTACATCAACTCATCCACACCATAGAATTTGTACTTGGAGCAGTATCTAATACAGCTTCTTACCTTCGTCTGTGGGCCCTTAGTCTTGCTCATTCAGAGTTATCAAGTGTATTCTACGAGAAGGTTCTGATGATGGCTTGGGGGTACAATAATGTGATTATCCTGATAGTTGGTTTAATTGTTTTCATTTTTGCTACCGTTGGAGTGTTACTTGTCATGGAAACTCTGAGTGCCTTCTTGCATGCACTGCGTCTTCACTGGGTGGAGTACCAAAACAAGTTTTATGAGGGTGATGGCTACTTGTTCCATCCTTTCTCGTTCTCATTGCTAGACGAAGAGGATGATGTGCTTTAA 2469 0.4297 MGEVAHGGGCCPPMDLFRSEPMQLIQLIIPIESAHRTVSYLGDLGLLQFKDLNSEKSPFQRTYAAQIKRCGEMARKLRFFKEQMIKAGVSPKGSTTEFDANIDNIEIKLTEIESELTEMNANGEKLQRTYNELVEYKLVLQKAGDFFHSAQSRAIEAQREYESRHLSGESMETPLLQDQELPGDSSKPVKLGFLAGLVPREKSVAFERILFRATRGNVFLRQTAVENPVADPVSGEKTEKNVFVVFYAGEKVKGKILKICDAFGANRYPFAEELGKQAQMISEVSGRLAELKTTIDAGLLHRVNLLENIGTQYEQWNLLVRKEKSIHHTLNMLSLDVTKKCLVAEGWSPVFATKQVQDALKRAAKDSNSQVSAILQVLHTRESPPTYFRTNKFTSPYQGIIDSYGVAKYQEANPTVFTVVTFPFLFAVMFGDWGHGICLLLAALYFIIREKKLSSQKLDDITEMTFGGRYIIFMMALFSIYTGLIYNEFFSVPFELFGPSAYECRDLSCRDSTTIGLIKTGPTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIMSYCNARFFKNSVNVWFQFIPQVIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLFAGQKNLQLVLLLLAGVAVPWMLLPKPFILKKQHEARHGDESYAPLPNTEESLQVESNHDSHGHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLMMAWGYNNVIILIVGLIVFIFATVGVLLVMETLSAFLHALRLHWVEYQNKFYEGDGYLFHPFSFSLLDEEDDVL 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02829 822 Pfam V-type ATPase 116kDa subunit family 40 812 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trre8g02829 822 Coils Coil 102 129 - -
Trre8g02829 822 PANTHER VACUOLAR PROTON ATPASES 16 818 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trre8g02829 822 PIRSF ATP6V0A1 12 821 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02829 Trre-Chr8 24362952 24374287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02829 14 820 Primary Pumps ATPases(2) AT4G39080 77.627 0.0 1295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02829 K02154 - gmx:100810062 1434.08