Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre8g02828 | ATGGCTTCCGATTCTACTCCCATGGATATCAACAACGGTCCTTCATCACCAGACAATTCCCTTTCAAGTCCAATCGCCAACACTTACTCTTCTCCTGGCCGGAGACGCCGCCGTCAATCTACTACTCCGTCAGGAACACCGCAGCCGAACCGATCTCGATTTGCTTCATCCGATGCTACACCAACTCCATCCCGCCACCGTGCAAGAGGCGCCAGCGGCGGTGTTCCCTCCGGCCGTCGTGTTCCTGCCACGCCGACTTCTACTTCTGACGATATACCGATGTCGTCGGAAGGCGGTGACGGTTATGATATGGATGATGCTGGTCCTACCTACGTTTGGGGGACTAATATAAGTGTGGAAGATGTGAACGACGCGATTCAGAGGTTTTTGAAGCATTTTAGGGAACGATCTAGTTCGCAGGGTGATGCTGATGATTTGGATGTTGATGGGAAGTATGAGAAATTGATTAAACAGGTTATTGAATTAGAAGGTGAATCGATTGATGTTGATGCTCGTGATGTGTTTGATCATGATCCTGATTTGTATAATAAGATGGTGAGGTATCCTCTTGAGGTGCTTGCAATTTTTGATATGGTTTTGATGAATATGGTTACTAGAGTGAAACCAATGTTTGAGAAGCATGTTCAAACGAGGATTTTTAATCTTAAATCCTCAACTTCTATGAGAAATTTGAACCCTTCTGATATTGAGAGGATGGTATCAATGAAGGGTATGATTATTCGAAGTAGCTCAATTATACCAGAAATTAGGGAAGCGATATTTAGGTGTCTTGTGTGTGGTTTCTGCTCTGACCCGGTACCTGTCGAGAGAGGACGAATTGCTGAACCTACTGTATGCTTGAGGGAAGAATGTCAGTCCAGGAATTCGATGACACTTGTTCACAACAGATGCAAGTTTACTGATAAACAAATTGTGAGGCTCCAGGAGACACCTGACGAGATACCCGAAGGAGGAACACCTCATACTGTTAGCTTGCTGTTGCATGACAAACTGGTGGATACTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATACAGGGCTATGAGTGTCAGGGTGGGACCAACTCAGAGAACTGTTAAGTCATTGTTCAAAACATATATTGATTGTCTTCACATAAAAAAGACATCAAAATCCCGGATGCTAGTTGAGGATGCTATGGAGGTTGACAATGGCCAGGGCAGAAATACAGAAGAAGTTATATTTGATGAAGAAAAGGTTGCTCAACTGAAGGAGCTCTCCAAACAACCAGATATATACGAAAGACTGACAAAGTCATTGGCGCCAAACATCTGGGAGCTAGATGATGTAAAGAAAGGTCTTCTTTGCCAGCTTTTTGGTGGCAATGCTTTGAAGTTGGCATCTGGTGCTAGCTTTCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCTGGTACAAGTAAGTCACAGCTACTTCAGTACATACACAAACTATCTCCGCGTGGCATTTACACTAGTGGAAGGGGGAGCTCAGCTGTTGGATTGACTGCTTATGTGGCCAAAGATCCTGAAACAGGCGAAACTGTTCTTGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATTTGCTGCATAGATGAATTTGACAAGATGTCTGACAATGCAAGGAGTATGTTACACGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGCATTATTGCTTCCCTCAATGCTAGGACTTCAGTGTTGGCTTGTGCAAACCCTAGTGGGTCACGATATAATCCCCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTATCCAGGTTTGATTTGATTTACTTAATGCTTGACAAGGCTGATGAACAGACTGACAGACGACTTGCCAAACATATTGTATCCCTGCACTTTAAGGATTATGAGAACATGGAGCAGGATGTGTTGGACCTTTCTACACTAACTGATTATGTTAGCTATGCCCGAAAGCACATACACCCACAGCTATCAGATGAAGCTGCTGATGAATTGATTACAGGCTATGTAAAAATAAGGGGTAGGGGAAAATTTACCGGAAGTAGCAAAAAGGTAATAACAGCAACTCCGAGACAGATTGAGAGTCTATTGCGCCTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATGGGTTGAAAAGCATGATGTTGTGGAGGCATTTCGGCTTTTGGAAGTTGCGATGCAGCAGTCTGCCATGGATATCAGAACTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGTCAAGCGAAAGGATGAGACGAGAAAGTTTGATTCAAGATACTCGCAACTTAATCATGGAGAAGATGCAAATTGGGGGACGTTCCATGCGTTTATTGGAGATATTGGAAGAATTGAAGAATCAGAGCCCTGGCAGCGAAATTCATCTTAATGATCTAAGGAGTGCAGTTGCTACTCTCGCCGGCGAAGGATTTCTTTCCATGCAGGGTGACAGTGTAAAAAGAACATGA | 2514 | 0.4399 | MASDSTPMDINNGPSSPDNSLSSPIANTYSSPGRRRRRQSTTPSGTPQPNRSRFASSDATPTPSRHRARGASGGVPSGRRVPATPTSTSDDIPMSSEGGDGYDMDDAGPTYVWGTNISVEDVNDAIQRFLKHFRERSSSQGDADDLDVDGKYEKLIKQVIELEGESIDVDARDVFDHDPDLYNKMVRYPLEVLAIFDMVLMNMVTRVKPMFEKHVQTRIFNLKSSTSMRNLNPSDIERMVSMKGMIIRSSSIIPEIREAIFRCLVCGFCSDPVPVERGRIAEPTVCLREECQSRNSMTLVHNRCKFTDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTSKSRMLVEDAMEVDNGQGRNTEEVIFDEEKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKADEQTDRRLAKHIVSLHFKDYENMEQDVLDLSTLTDYVSYARKHIHPQLSDEAADELITGYVKIRGRGKFTGSSKKVITATPRQIESLLRLSEALARIRFSEWVEKHDVVEAFRLLEVAMQQSAMDIRTGTIDMDLITTGVSSSERMRRESLIQDTRNLIMEKMQIGGRSMRLLEILEELKNQSPGSEIHLNDLRSAVATLAGEGFLSMQGDSVKRT | 837 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre8g02828 | 837 | ProSitePatterns | MCM family signature. | 536 | 544 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Trre8g02828 | 837 | Gene3D | - | 116 | 222 | - | - | |
| Trre8g02828 | 837 | SUPERFAMILY | Nucleic acid-binding proteins | 149 | 378 | IPR012340 | - | |
| Trre8g02828 | 837 | Gene3D | - | 255 | 307 | - | - | |
| Trre8g02828 | 837 | Pfam | MCM N-terminal domain | 125 | 221 | IPR027925 | - | |
| Trre8g02828 | 837 | Pfam | MCM P-loop domain | 415 | 637 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g02828 | 837 | Pfam | MCM OB domain | 228 | 357 | IPR033762 | - | |
| Trre8g02828 | 837 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 123 | 791 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g02828 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 468 | 483 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g02828 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 556 | 569 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g02828 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 580 | 592 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g02828 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 607 | 615 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g02828 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 528 | 542 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g02828 | 837 | ProSiteProfiles | MCM family domain profile. | 427 | 633 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g02828 | 837 | Gene3D | - | 408 | 752 | IPR027417 | - | |
| Trre8g02828 | 837 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
| Trre8g02828 | 837 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
| Trre8g02828 | 837 | FunFam | DNA helicase | 255 | 307 | - | - | |
| Trre8g02828 | 837 | FunFam | DNA helicase | 408 | 746 | - | - | |
| Trre8g02828 | 837 | Gene3D | - | 228 | 367 | IPR012340 | - | |
| Trre8g02828 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 301 | 313 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Trre8g02828 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 250 | 263 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Trre8g02828 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 589 | 606 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Trre8g02828 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 443 | 454 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Trre8g02828 | 837 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 741 | 750 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Trre8g02828 | 837 | Pfam | MCM AAA-lid domain | 653 | 739 | IPR041562 | - | |
| Trre8g02828 | 837 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 438 | 740 | IPR027417 | - | |
| Trre8g02828 | 837 | SMART | mcm | 224 | 741 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre8g02828 | 837 | CDD | MCM4 | 430 | 739 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre8g02828 | Trre-Chr8 | 24351184 | 24355850 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre8g02828 | 1 | 836 | Core DNA Replication Machinery Family | AT2G16440 | 73.647 | 0.0 | 1254 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre8g02828 | K02212 | - | gmx:100805788 | 1415.59 |