Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02826 ATGTCTGCAACACAATTAAGAGAAGTATCAAAGGGTTCAAAGTGTGAAGAGTGTGGGAACCTAGCAAAGAAAGATTGTGCATACTCAAGATGCAGAAATTGTTGCAAGAACAAAGGCTTTAACTGTCAAACACATATCAGAAGTACTTGGATTCCTGCTGATAGAAGACGGCGCAACAGAATGGACCAACCTCCAAACCTTGATGAACATAAAAGGCACAAGCAGATCATCATCAACCCTTTTTCAAGTTTTGAAGAGTTAAAATTCCCATCTGTATTCTGTTGTGAGTTCCATGGCGACATTGACCTGTGTTCAGATGCGATCGATGGATGA 333 0.4054 MSATQLREVSKGSKCEECGNLAKKDCAYSRCRNCCKNKGFNCQTHIRSTWIPADRRRRNRMDQPPNLDEHKRHKQIIINPFSSFEELKFPSVFCCEFHGDIDLCSDAIDG 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02826 110 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 9 75 IPR007818 GO:0003700|GO:0006355
Trre8g02826 110 NCBIfam putative zinc finger domain, LRP1 type 14 56 IPR006510 -
Trre8g02826 110 Pfam Domain of unknown function (DUF702) 12 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02826 Trre-Chr8 24323564 24324014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02826 12 103 C2H2 Transcription Factor Family AT2G21400 44.330 1.65e-21 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre8g02826 DUF702 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02826 - - tpra:123914782 166.007