Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02813 ATGAAGATCCAGTGTGATGCATGTCAGAAACAAGAAGCATCTTTGTTCTGCCCTGCAGATGAAGCAGCTCTCTGCAATCACTGTGATCATACAATTCACCAAGCCAACAAGCTCTCTGCCAAACACAAACGTTTCTCACTTCACCACCCCACTTCCAAAGACATCCCTCTCTGTGATATCTGCAAGGAGAGACGTGCGTATCTATTTTGCAAAGAAGACAGAGCAATACTTTGCAGAGAATGTGACATTCCTATCCATAGAGACACTCAACTTACCAAGAAACATAACAGATTTCTTATCACAGGCGTAAAGATCGGTGCTGCTGTTTCTTCCTCAGACCCAACAACATCAAATGGCTCAGAAGTAAGAACTTCGCTTTCAAGAGAATCACAACCAAGTTCATTTTCAAGTGAAAATAACCATTGTTCTCGCACTTTCAAAGACAACATGGCCTATGAAACAATTTCAACAAGTAGCATTTCTGAATACTTGATTGAATCTATTCCTGGTTACAGCATGGAAGACCTTTTTGATGCTTCTTTTGCACCTAGTGTTTTCTATAAGGATTATCAACAGAACCAAGATCATCGAGTTACAAGCATGTGTGACTCGGTACCACAATATGAAGTTAGATCCCCTCAGCTTAGCCTTAGTGCTAGCGTCAACGTTCCACAGATTGATTCTTTAGATGGGGTTATGAAAATGCTAGTAACGAAAGCTGTCGAAGGATATTCGAGTTGGAGATATTTGGATCGTTAA 759 0.4071 MKIQCDACQKQEASLFCPADEAALCNHCDHTIHQANKLSAKHKRFSLHHPTSKDIPLCDICKERRAYLFCKEDRAILCRECDIPIHRDTQLTKKHNRFLITGVKIGAAVSSSDPTTSNGSEVRTSLSRESQPSSFSSENNHCSRTFKDNMAYETISTSSISEYLIESIPGYSMEDLFDASFAPSVFYKDYQQNQDHRVTSMCDSVPQYEVRSPQLSLSASVNVPQIDSLDGVMKMLVTKAVEGYSSWRYLDR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02813 252 Gene3D Classic Zinc Finger 1 96 - -
Trre8g02813 252 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre8g02813 252 CDD Bbox1_BBX-like 5 47 - -
Trre8g02813 252 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 209 - -
Trre8g02813 252 MobiDBLite consensus disorder prediction 109 140 - -
Trre8g02813 252 CDD Bbox1_BBX-like 57 100 - -
Trre8g02813 252 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Trre8g02813 252 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Trre8g02813 252 SMART bboxneu5 53 100 IPR000315 GO:0008270
Trre8g02813 252 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre8g02813 252 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Trre8g02813 252 FunFam B-box zinc finger protein 21 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02813 Trre-Chr8 24220196 24221793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02813 1 178 C2C2-CO-like Transcription Factor Family AT4G39070 50.746 1.79e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Trre8g02813 zf-B_box 6.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02813 - - gmx:100790232 283.108