Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02788 ATGGAAGTTGTTGTAGCAAAAGCGTTGAAACCAAGCTTACGAACAGAATCTATTTTTCCACAAACAATTTGTGAAGAGATTTTGTGTTTGAACGCTAACAACGTTGTTGTCGGTGAAGATTTTTCCGTTGATGACTTACTTGACTTTTCCAACGGCGAGTTTCAACATGGTTCTGTCGGAAAAGAAATTGATGATTACGAGGAAGAAGAAGAAGAACATGACAAAAACAGCACCACCTCGGTTTGTTCACAGGACCGAACAGAAGATGACGGTAATTCAAATTCAACAACTTTTTCCGGTGCCGGCGACGGCGAGTCTGACTCCATTTTTGCCGGCGGATTATCAGTTCCCGTTGATGATGTTGCGGATTTGGAATGGGTATCTCAGTTTGTTGATGATTCTCTGCCGGAACTCTCTCTTTTGTATCCGGTTCAGGCCCGGGTCGAACCGGAAGCTAGACCGGTTCCAACAAAAGCTTCTTCGCAACTCTGTTTAATCCGTAGAAAGCCAAGAACCAACAAGCCTAGAAGGCCCAACTGTAACATGTGGGCCTTCAACCCGGTACTTTCTTCTGCAAAGAAGCAGAGGAAAAAGCCCGAGGCTCAAACGGGTGGAGCCCAGTTTCAAAGAAGGTGCAGCCACTGCCAGGTGCAGAAAACGCCACAGTGGAGAGCCGGTCCGCTTGGACCGAAAACACTCTGTAATGCTTGTGGTGTTCGGTTTAAATCCGGTCGGCTTTTTCCAGAGTATAGACCGGCTTCAAGCCCAACTTTTTCCGGCGATATTCACTCGAACAGCCACCGTAAGGTTTTGGAGATGAGGCGGAGGAAGGAGACCGATGAACCAGAGACCGGTCTGGACCGGAATTAA 870 0.4747 MEVVVAKALKPSLRTESIFPQTICEEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVGKEIDDYEEEEEEHDKNSTTSVCSQDRTEDDGNSNSTTFSGAGDGESDSIFAGGLSVPVDDVADLEWVSQFVDDSLPELSLLYPVQARVEPEARPVPTKASSQLCLIRRKPRTNKPRRPNCNMWAFNPVLSSAKKQRKKPEAQTGGAQFQRRCSHCQVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPASSPTFSGDIHSNSHRKVLEMRRRKETDEPETGLDRN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02788 289 MobiDBLite consensus disorder prediction 252 289 - -
Trre8g02788 289 MobiDBLite consensus disorder prediction 80 103 - -
Trre8g02788 289 ProSitePatterns GATA-type zinc finger domain. 212 237 IPR000679 GO:0006355|GO:0043565
Trre8g02788 289 PANTHER GATA TRANSCRIPTION FACTOR 30 280 - -
Trre8g02788 289 Gene3D - 205 257 IPR013088 GO:0006355|GO:0008270
Trre8g02788 289 SMART GATA_3 206 256 IPR000679 GO:0006355|GO:0043565
Trre8g02788 289 FunFam GATA transcription factor 202 286 - -
Trre8g02788 289 Pfam GATA zinc finger 212 245 IPR000679 GO:0006355|GO:0043565
Trre8g02788 289 MobiDBLite consensus disorder prediction 265 289 - -
Trre8g02788 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 269 - -
Trre8g02788 289 PIRSF Txn_fac_GATA_plant 22 288 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trre8g02788 289 MobiDBLite consensus disorder prediction 65 104 - -
Trre8g02788 289 CDD ZnF_GATA 211 268 IPR000679 GO:0006355|GO:0043565
Trre8g02788 289 ProSiteProfiles GATA-type zinc finger domain profile. 210 242 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02788 Trre-Chr8 23969121 23970101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02788 40 280 C2C2-Gata Transcription Factor Family AT4G36240 46.693 1.02e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre8g02788 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02788 - - gmx:100776188 367.466