Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02756 ATGTCCAAGATGTTGCGGGACATAGACCCTACACAATGTGAAAACGCAATTGATTCATTAGTTTTTGAGGCTGAAGCTCGTCTGAAGGACCCTATTAATGGGTATTTGAATTATGTTCACAATCTTGAACATCGGTTGATGGAAGTTCAACAAGAAATCAATAATGTGAAGAGTGAACTGACCAAATACCTCAGTCCTGAGGTCATTCAATTTGTGATGAATAAACCTGATTATTAG 237 0.3755 MSKMLRDIDPTQCENAIDSLVFEAEARLKDPINGYLNYVHNLEHRLMEVQQEINNVKSELTKYLSPEVIQFVMNKPDY 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02756 78 Pfam Lateral organ boundaries (LOB) domain 2 57 IPR004883 -
Trre8g02756 78 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 65 - -
Trre8g02756 78 Coils Coil 39 59 - -
Trre8g02756 78 ProSiteProfiles LOB domain profile. 1 60 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02756 Trre-Chr8 23533947 23534183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02756 1 69 AS2 family AT5G66870 39.130 5.82e-14 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre8g02756 LOB 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02756 - - mtr:11411349 81.6481