Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02741 ATGGATTCAAAGAAGAAGAAGGATACTGGAATTGGTGGTTCGAAGAAGAAACAGAAAGGGAAAATAAGAGATGGGTTTGAAGAAAGAGTTGTTCAAGTTAGAAGGGTTACTAAGGTTGTTAAAGGTGGGAAACAAATGAGGTTTAGAGCTATTGTTGTTGTTGGTGATAAGAATGGACAAGTTGGTGTTGGTGTTGGTAAAGCTAAAGAAGTTATTTGTGCTGTTCAGAAATCTGATATTGATGCTAGAAGGAATATTATTAGAGTTCCCATGACTAAGTACTTGAGATTATGGTCACTATAG 303 0.3597 MDSKKKKDTGIGGSKKKQKGKIRDGFEERVVQVRRVTKVVKGGKQMRFRAIVVVGDKNGQVGVGVGKAKEVICAVQKSDIDARRNIIRVPMTKYLRLWSL 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02741 100 FunFam 30S ribosomal protein S5 14 87 - -
Trre8g02741 100 ProSiteProfiles S5 double stranded RNA-binding domain profile. 26 89 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre8g02741 100 Pfam Ribosomal protein S5, N-terminal domain 26 90 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre8g02741 100 ProSitePatterns Ribosomal protein S5 signature. 43 75 IPR018192 -
Trre8g02741 100 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 6 90 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre8g02741 100 Gene3D - 22 87 - -
Trre8g02741 100 MobiDBLite consensus disorder prediction 1 23 - -
Trre8g02741 100 SUPERFAMILY dsRNA-binding domain-like 23 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02741 Trre-Chr8 23161905 23162207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02741 22 89 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 38.235 9.38e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02741 K02988 - gmx:100820232 125.176