Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02716 ATGGGAAGATCACCTTGTTGTGAAAAAGCTCATACAAACAAAGGAGCATGGACAAAAGAAGAAGATGATAGACTTATATCTTATATTAGAGCTCATGGTGAAGGTTGTTGGAGATCTCTTCCTAAAGCTGCTGGTTTACTCCGTTGTGGTAAAAGTTGCCGTCTCCGTTGGATTAATTATCTCCGACCAGACCTTAAACGTGGTAACTTTACAGAAGAAGAAGATGAACTCATCATCAAACTCCATAGTCTTCTTGGTAACAAATGGTCTTTGATTGCTGGAAGATTACCTGGTAGAACTGATAATGAGATTAAGAATTATTGGAACACTCATATTAGAAGAAAGCTTCTTAACAGAGGAATTGACCCTGCAACTCATAGACCTCTAAATGAACCTCCTCATTCTCAATCTCAATATCAACCACTTCATCTTCAGAATCATAATCAGAATCAAGAAGCTGTTACTATAGCTGTAGCAGCATCTGCAACAACTACTACTACTACTACTACTATTCCTGTAGTAACAGTACCAACAACAACAACTATATCATTTGCTTCATCTGTTAAACAAGAACAATATCATCATCATTATAATCATCATCATCATCAAGAGATTAACACAAGTATGATTAAAGGGTCAGTGTTAGAAAGATGTCCTGATTTGAATCTTGAGTTAACAATTAGTCCACCAAGACAACAAGAACATGATGAACAATTCAAAAACAGAAACCTCTGTTTTGTTTGTAGTTTGGGTTTACAAAACAGTAAAGATTGTAGCTGTGATGATATTGTTGGAAATTCAAGCACTGGAAATGCTTCTACTGCTCCTGCTTATGATTTCTTAGGTTTGAAAGCTGGTGTTTGGGATTACAAAGGCTTAGAAATGAAATGA 891 0.3591 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEPPHSQSQYQPLHLQNHNQNQEAVTIAVAASATTTTTTTTIPVVTVPTTTTISFASSVKQEQYHHHYNHHHHQEINTSMIKGSVLERCPDLNLELTISPPRQQEHDEQFKNRNLCFVCSLGLQNSKDCSCDDIVGNSSTGNASTAPAYDFLGLKAGVWDYKGLEMK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02716 296 FunFam Myb transcription factor 68 137 - -
Trre8g02716 296 CDD SANT 69 112 IPR001005 -
Trre8g02716 296 FunFam MYB-related transcription factor 13 66 - -
Trre8g02716 296 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 223 - -
Trre8g02716 296 CDD SANT 16 61 IPR001005 -
Trre8g02716 296 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Trre8g02716 296 SMART sant 66 114 IPR001005 -
Trre8g02716 296 SMART sant 13 63 IPR001005 -
Trre8g02716 296 Gene3D - 68 153 - -
Trre8g02716 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre8g02716 296 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre8g02716 296 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre8g02716 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre8g02716 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre8g02716 296 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre8g02716 296 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02716 Trre-Chr8 22768899 22769874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02716 1 296 MYB Transcription Factor Family AT4G38620 56.825 1.39e-111 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g02716 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02716 K09422 - gmx:780553 380.563