Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02693 ATGCAGATCATCGTCAAAACTTTGACCGGAAAGACTATCACTCTCGAGGTTGAGACCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCCCACTCTTGCTGACTATAATACAAAAGGAATCAACCCTTCACTTGGTCCTAAGGCTCAGAGGAGGAACCATGATTAA 237 0.4768 MQIIVKTLTGKTITLEVETSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGPTLADYNTKGINPSLGPKAQRRNHD 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02693 78 PANTHER UBIQUITIN 1 62 - -
Trre8g02693 78 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trre8g02693 78 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trre8g02693 78 PRINTS Ubiquitin signature 53 74 IPR019956 -
Trre8g02693 78 FunFam Polyubiquitin-C 1 66 - -
Trre8g02693 78 MobiDBLite consensus disorder prediction 55 78 - -
Trre8g02693 78 SUPERFAMILY Ubiquitin-like 1 62 IPR029071 -
Trre8g02693 78 Gene3D - 1 69 - -
Trre8g02693 78 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trre8g02693 78 Pfam Ubiquitin family 3 61 IPR000626 GO:0005515
Trre8g02693 78 SMART ubq_7 1 67 IPR000626 GO:0005515
Trre8g02693 78 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02693 Trre-Chr8 22233207 22234507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02693 1 78 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 69.565 7.34e-37 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02693 K02927 - han:110944285 120.553