Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02685 ATGGGTTCGAAACTAACAGGGAAGGTGAAATGGTTCAATGATCAGAAGGGGTTTGGTTTCATCACCCCTGATGATGGCACTGATGAGCTTTTCGTTCATCAATCGCAGATCCAGACTGACGGTTTCCGTAGTCTTGCTGAAGGAGAGTCTGTTGAGTATCAGATCGAATCTGATAACGATGGACGATCTAAGGCTGTTAATGTTACTGGACCTGATGGTGCTAATGTTCAAGGAACCAGACGCGGCGGTGGTGGCGGCGGCGGTGGTTATGAGCGTGGTGGTGGAGGTTATGGAGGTGGAGGTTATGGAGGTGGAGGCGGTTATGGAGGTGGAAGAGGTGGAGGCGGCTACAGTGGTAGCGGAGGAGGCTATGGTGGTGGTGGTGGTCGTGGAGGTGGACGTGGTGGAGGCGGCGGTGGCTGCTATAACTGTGGTGAATCTGGACACATGGCTAGGGATTGCAGCAGCGGTGGAAGCGGTGGAGGAGGTGGTGGTAGGTACGGTGGAAGCGGTGGAGGAGGTGGCGGCGGCGGTGGAAGCTGCTACAACTGTGGAGAGTCTGGTCACTTTGCCAGAGATTGCCCAACCAGTGCTCGTTAG 600 0.5533 MGSKLTGKVKWFNDQKGFGFITPDDGTDELFVHQSQIQTDGFRSLAEGESVEYQIESDNDGRSKAVNVTGPDGANVQGTRRGGGGGGGGYERGGGGYGGGGYGGGGGYGGGRGGGGYSGSGGGYGGGGGRGGGRGGGGGGCYNCGESGHMARDCSSGGSGGGGGGRYGGSGGGGGGGGGSCYNCGESGHFARDCPTSAR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02685 199 ProSiteProfiles Zinc finger CCHC-type profile. 181 195 IPR001878 GO:0003676|GO:0008270
Trre8g02685 199 SUPERFAMILY Retrovirus zinc finger-like domains 133 197 IPR036875 GO:0003676|GO:0008270
Trre8g02685 199 CDD CSP_CDS 6 70 IPR002059 GO:0003676
Trre8g02685 199 Gene3D - 2 82 IPR012340 -
Trre8g02685 199 SMART csp_8 6 71 IPR011129 GO:0003676
Trre8g02685 199 Pfam Zinc knuckle 140 155 IPR001878 GO:0003676|GO:0008270
Trre8g02685 199 Pfam Zinc knuckle 180 195 IPR001878 GO:0003676|GO:0008270
Trre8g02685 199 Gene3D - 130 163 - -
Trre8g02685 199 Gene3D - 176 199 - -
Trre8g02685 199 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Trre8g02685 199 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Trre8g02685 199 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Trre8g02685 199 MobiDBLite consensus disorder prediction 153 174 - -
Trre8g02685 199 SMART c2hcfinal6 180 196 IPR001878 GO:0003676|GO:0008270
Trre8g02685 199 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Trre8g02685 199 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Trre8g02685 199 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Trre8g02685 199 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Trre8g02685 199 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Trre8g02685 199 PANTHER COLD SHOCK DOMAIN PROTEIN 2 109 196 - -
Trre8g02685 199 MobiDBLite consensus disorder prediction 57 87 - -
Trre8g02685 199 ProSiteProfiles Zinc finger CCHC-type profile. 141 154 IPR001878 GO:0003676|GO:0008270
Trre8g02685 199 MobiDBLite consensus disorder prediction 60 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02685 Trre-Chr8 22149535 22150134 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Trre8g02685 CSD 1.2e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02685 - - twl:119991227 169.859