Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02683 ATGTCGAGTATTGTGAAGGAGATCCTCGCGAGGCCGATACAAATGGCTGATCAAATATCAAAATTTGCAGATGAGGCACAAAATTTCAAACAAGAATGTTTAGAATTAAAAACCAAAACGGAAAAACTCGCAGGTCTTCTTCGACAAGCCGCGAGGAACAGCAACGACCTCTATGAACGTCCAACAAGACGAATCATTGATGATACCGAACAAGTCCTCGATAAAGCCCTTGGATTAGTCATCAAATGTCGTGTCAACGGCCTTGTAAAACGTCTATTCACCATCATCCCCGCGACCGCCTTTCGCAAAACCTCAATGCAGCTTGAAAATTCCCTTGGAGATGTTCAATGGCTATTAAGAGTCTCCGCTTCCGCGGAAGAACGCGATGACGAATATCTTGGTCTTCCTCCCATTGCAGCTAATGAACCAATCCTTTGTCTCATTTGGGAACAAGTTGCAATTCTTCTTTCTGGTTGTTCGATCGAAGAACGTTCAGATGCTGCGGCTTCTCTTGTTTCATTGGCACGCGACAATGATCGTTACGGAAAATTGATTCTAGAAGAAGGTGGGGTTCCACCTCTTCTAAAACTTCTTAAAGAAGGAAAACTTGATGGTCAAGAAAACGCTGCAAGAGCAATTGGTTTACTTGGTAGAGATCCAGAAAGCGTCGAACACATTGTGAATTGCGGTGTTTGTTCTGTTTTCGCGAAAATACTCAAAGAAGGTCACATGAAAGTTCAAATTGTTGTTGCTTGGGCTATTTCAGAACTTGCAGCACATCATCCAAAATGTCAAGATCATTTTGCTCAAAACAATGCGATTCGTTTGCTTGTAAGTCACCTCGCTTTCGAAACAATTCAAGAACATAGTAAGTATGCTATTACAAACAAACAAAACATGTCTTCTATTCATTCCCTTGTTATGGCTAGCAACAATAACAACGATGATAGTGGCAAAGGTGTTCAAGAAGATGATTATAGGATTATGAATCACCCTGGTGCTAGTCAAACATCTAATCAAATGCATAGTGTTATCAATAACACAATAGCCATGAAGGGAAATAATAAGAAAGAAGATAGTATCAACAATGCAATTGTAAAGAACAACAACAATAATAATAATAATAACAACAACAACAATGTATCGATTGCGGGGACGAGTATTAAAGGGAGAGAATTTGAAGATCCTAGAACAAAAGCACAAATGAAAGCAATGGCAGCTAGAGCATTATGGCAACTATGTAGAAAAAATATTACTATATGTCATACTATTACAGAATCAAGAGCTCTTTTGTGTTTCGCGGTTTTATTGGAAAAAGGTACTGATGATGTACAACATTATTCAGCAATGGCTTTAATGGAAATAACATCTGTTGCAGCAGAACATGCAGAACTAAGACGTTCCGCTTTCAAACCAACTTCTCCTTCAGCAAAAGCTGTAGTGGAACAGTTTCTTAAGGTTATCGATAAAGGAAACTCCGATGATTTACTCATACCTTGTGTTAAAGCTGTTGGTAACTTAGCAAGGACTTTTAGAGCAACCGAAACCAGATTCATCGCGCCATTGGTAAGATTACTCGACGAAAGAGAACCTGTCATTTCTATGGAAGCAGCAGTTTCTTTAATCAAATTTGCTGAGACTGATAACTATCTTCATGAGACTCATTGCAATGCTATTATAGCAGCAGGTGGTGCTAAGCATTTGATTCAACTTGTTTACTTTGGGGAACAAATGGTGCAAATTCCTTCTTTGCTTCTTTTGTGTTACATATCATTACATGTTCCTAAAAATGAGACTCTTGGTCAAGAGGAGGTGTTAATAGTACTTGAGTGGAGTACAAAACAAGCACAACTAATATCAGAACCAAGAATTGAACCAATTTTACTAGAAGCCAAAATAGCTATTCAATTTCCTTTCTCAAACTCATCAGAACAAGCAGCAGAGATTACAAGATGGGCTATGAGAGCATTGCCGCCGGTTAAAACTTTTAATGGAGCCGGAAATATGGATTGTCCTATTTGTATAGAAGAATTTGAGAAAGGAGAATTGATTCAATCTTTTGGAGTGTGTGGCCATGAATTTCATACCTCTTGTCTTAATTCTTGGTTACTCGGAGGAAAAACTACTTGTCCAGTTTGTCGCCTAGATTTGTCCATTCAAATTATGATCTAG 2172 0.3854 MSSIVKEILARPIQMADQISKFADEAQNFKQECLELKTKTEKLAGLLRQAARNSNDLYERPTRRIIDDTEQVLDKALGLVIKCRVNGLVKRLFTIIPATAFRKTSMQLENSLGDVQWLLRVSASAEERDDEYLGLPPIAANEPILCLIWEQVAILLSGCSIEERSDAAASLVSLARDNDRYGKLILEEGGVPPLLKLLKEGKLDGQENAARAIGLLGRDPESVEHIVNCGVCSVFAKILKEGHMKVQIVVAWAISELAAHHPKCQDHFAQNNAIRLLVSHLAFETIQEHSKYAITNKQNMSSIHSLVMASNNNNDDSGKGVQEDDYRIMNHPGASQTSNQMHSVINNTIAMKGNNKKEDSINNAIVKNNNNNNNNNNNNNVSIAGTSIKGREFEDPRTKAQMKAMAARALWQLCRKNITICHTITESRALLCFAVLLEKGTDDVQHYSAMALMEITSVAAEHAELRRSAFKPTSPSAKAVVEQFLKVIDKGNSDDLLIPCVKAVGNLARTFRATETRFIAPLVRLLDEREPVISMEAAVSLIKFAETDNYLHETHCNAIIAAGGAKHLIQLVYFGEQMVQIPSLLLLCYISLHVPKNETLGQEEVLIVLEWSTKQAQLISEPRIEPILLEAKIAIQFPFSNSSEQAAEITRWAMRALPPVKTFNGAGNMDCPICIEEFEKGELIQSFGVCGHEFHTSCLNSWLLGGKTTCPVCRLDLSIQIMI 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02683 723 ProSiteProfiles Zinc finger RING-type profile. 671 714 IPR001841 -
Trre8g02683 723 FunFam Armadillo repeat only 2 150 320 - -
Trre8g02683 723 Gene3D - 148 325 IPR011989 -
Trre8g02683 723 PANTHER ARMADILLO REPEAT ONLY 4 1 637 - -
Trre8g02683 723 CDD RING-H2 671 714 - -
Trre8g02683 723 FunFam Armadillo repeat only 4 2 121 - -
Trre8g02683 723 Pfam Ring finger domain 670 714 IPR001841 -
Trre8g02683 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 658 719 IPR013083 -
Trre8g02683 723 SMART arm_5 219 259 IPR000225 GO:0005515
Trre8g02683 723 SMART arm_5 552 592 IPR000225 GO:0005515
Trre8g02683 723 SMART arm_5 177 218 IPR000225 GO:0005515
Trre8g02683 723 SMART arm_5 416 457 IPR000225 GO:0005515
Trre8g02683 723 SMART arm_5 473 509 IPR000225 GO:0005515
Trre8g02683 723 Coils Coil 19 39 - -
Trre8g02683 723 SUPERFAMILY RING/U-box 665 720 - -
Trre8g02683 723 Gene3D - 3 121 IPR036537 GO:0007166
Trre8g02683 723 Pfam Armadillo/beta-catenin-like repeat 184 215 IPR000225 GO:0005515
Trre8g02683 723 Pfam Armadillo/beta-catenin-like repeat 219 259 IPR000225 GO:0005515
Trre8g02683 723 SMART ring_2 671 713 IPR001841 -
Trre8g02683 723 SUPERFAMILY ARM repeat 155 600 IPR016024 -
Trre8g02683 723 Gene3D - 369 657 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02683 Trre-Chr8 22126874 22136769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02683 623 714 C3H Transcription Factor Family AT2G27940 34.043 4.23e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02683 - - gmx:100807066 949.118