Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02661 ATGGCATCTTCTTTCGTCAAGCTTGATGATTCCCCAATGTTCCACAAACAGTTATTTTCTATTGAAGAAACATCAGACGAGTTGAAGGATCGGTGCCAGAATCTATTTAAAGGGTGTAAGAAGTTTATGACAGCTTTAGGGGAAGGATATAATGGAGAACTTGCCTTTGCTGATTCATTAGAAGCATTTGGAGGTGGCCACGACGATCCTGTCAGTGTATCAATTGGAGGACCCGTCATATCTAAGTTTATCACCGCACTACGTGAATTAGCTACTTTTAAAGAACTTCTTCGCTCACAGGTAGAGCATGTATTGATAGACCGGCTGACAGAGTTTATAAATGTTGATTTGCAAAATGCAAAGGAATCTCGCCGTCGTTTTGACAAATCTGTGCATGCTTATGATCAGTCACGAGAAAAGTTTGTTTCTTTGAAGAAGAATACACCGGAAGACATTGTTGCTGAATTAGAAGAGGGTCTACAAAATTCAAAGTCATCATTTGAGAAAAGCCGCTTCAATCTAGTACACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCCATAAGTGCAATAATGGATGCTCATCTGAGATACTTTAAACTGGGTTACGACTTGCTGAGCCAAATGGAGCCTTACATTCACCAGGTGCTAACATATGCTCAACAATCTAAAGAACTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGAACACAGACAGAGCTGGATAATACTGAACCCATGCTAGGTGCTGATGGCACCCAACCTGTAGGCTTGCATTCTTACAAAAACTTTGAGGCAGGGGTGCAGTCTGCAACCAAAGGCGAGATTCAAACAGTTAAACAAGGCTATCTGTTAAAACGATCATCAAGGACGCGAGGAGATTGGAAAAGGAGGTTTTTTGTACTTGATAACCATGGGAGTTTATATTATTACAGATCAAAAGGACCCAAGGCCATGGGATTTCAGTCACATAATTATAGTCGTTTTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCATAATAGGGCAACATCACTAAATGAGGATATTTTGGGTTGTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTTCGTATTATTTCTCCCTCAAAAACATATACATTGCAGGCTGAAAATGAAGCTGATAGGATGGATTGGGTACACAAAATTACTGGAGCTATCACTTCACTTTTTAATTTTCAGTTTCTTCAACAGCCTCATTATGGTAAATTGCAACTAGAAAATAAAAACTCAGCAACTGGTTCTTCTTTGACAAGTCAACAAGAGGGTAGTAATAAATCTTTGATGGATGATGTATTTTTCAAAGAAGCGGGCAGTGTCTCTCAAATTTTAAGGAGAATTCCTGGGAATGATAAGTGTGCTGAGTGCAGTGCTCCTGAACCAGACTGGGCATCTCTAAACCTTGGTATACTTCTATGTATTGAATGCTCCGGAGTGCATCGCAATTTTGGAGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTGAGGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAACTTAGGTAATACTTATTGTAATTCTATTTGGGAGGGCTTGCTTCTACTTGGCGACGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCATGCTCCACAGATCCCTCCCAATATAAAGAAAAGTACATCCAGGCAAAGTATGTAGAGAAATCACTAGTCATCCGGGAAGAGGATACACCTGAAAATCCTTCAGTTTCCTCAAAAATCTGGCAAGCAGTTCAAGATATAAATGTACGAGAAGTGTATCGCCTTATTGTAGCATCAACTTCAAATCCAATAAACACAAAATATGATGATGTGGTTCCCCATGCCGATACTGAAGGAAATCAGCATGATCCTGAAGCCTGTCTGAGGATTAAAGAGGCTAATGAAAGAGAGAGTTGTTTCCGTGGTTGGTCTATATTACATCTGGCATGTCATTCTGATAGTACACTAATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATATAAACATGCGTGACTATCATGGAAGGACTCCCTTGCACCATTGCATCTCTAGCGGGAAAAATCCATTGGCAAAGTTTTTACTAAGAAGGGGCGCAAAACCGTCAATTAAAGATGCTGCTGGACATACTGCACTTGAAAGAGCAATGGAGTTGGGAGCAATAACTGACGAACAGTTGTTTATCATGCTTGTTGAACACCAGTAA 2304 0.3989 MASSFVKLDDSPMFHKQLFSIEETSDELKDRCQNLFKGCKKFMTALGEGYNGELAFADSLEAFGGGHDDPVSVSIGGPVISKFITALRELATFKELLRSQVEHVLIDRLTEFINVDLQNAKESRRRFDKSVHAYDQSREKFVSLKKNTPEDIVAELEEGLQNSKSSFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQTELDNTEPMLGADGTQPVGLHSYKNFEAGVQSATKGEIQTVKQGYLLKRSSRTRGDWKRRFFVLDNHGSLYYYRSKGPKAMGFQSHNYSRFSEQNSGMFGRFRSRHNRATSLNEDILGCCTVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVHKITGAITSLFNFQFLQQPHYGKLQLENKNSATGSSLTSQQEGSNKSLMDDVFFKEAGSVSQILRRIPGNDKCAECSAPEPDWASLNLGILLCIECSGVHRNFGVHISKVRSITLDVRVWEPTILELFNNLGNTYCNSIWEGLLLLGDERVGESNVPLKPCSTDPSQYKEKYIQAKYVEKSLVIREEDTPENPSVSSKIWQAVQDINVREVYRLIVASTSNPINTKYDDVVPHADTEGNQHDPEACLRIKEANERESCFRGWSILHLACHSDSTLMVELLLQFGADINMRDYHGRTPLHHCISSGKNPLAKFLLRRGAKPSIKDAAGHTALERAMELGAITDEQLFIMLVEHQ 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02661 767 PRINTS HIV Rev interacting protein signature 484 503 IPR001164 GO:0005096
Trre8g02661 767 PRINTS HIV Rev interacting protein signature 526 547 IPR001164 GO:0005096
Trre8g02661 767 PRINTS HIV Rev interacting protein signature 503 520 IPR001164 GO:0005096
Trre8g02661 767 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Trre8g02661 767 SUPERFAMILY BAR/IMD domain-like 8 311 IPR027267 -
Trre8g02661 767 Gene3D - 609 758 IPR036770 -
Trre8g02661 767 ProSiteProfiles Ankyrin repeat profile. 707 739 IPR002110 GO:0005515
Trre8g02661 767 CDD PH_ACAP 291 426 - -
Trre8g02661 767 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Trre8g02661 767 ProSiteProfiles Ankyrin repeat profile. 674 706 IPR002110 GO:0005515
Trre8g02661 767 SUPERFAMILY Ankyrin repeat 664 753 IPR036770 -
Trre8g02661 767 Coils Coil 229 249 - -
Trre8g02661 767 Pfam PH domain 290 421 IPR001849 -
Trre8g02661 767 ProSiteProfiles ARF GTPase-activating proteins domain profile. 472 604 IPR001164 GO:0005096
Trre8g02661 767 SUPERFAMILY ArfGap/RecO-like zinc finger 475 597 IPR037278 -
Trre8g02661 767 SMART arf_gap_3 472 604 IPR001164 GO:0005096
Trre8g02661 767 Gene3D - 281 432 IPR011993 -
Trre8g02661 767 CDD BAR_SFC_plant 16 217 IPR035670 -
Trre8g02661 767 ProSiteProfiles PH domain profile. 288 422 IPR001849 -
Trre8g02661 767 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Trre8g02661 767 PANTHER CENTAURIN/ARF 3 764 IPR045258 GO:0005096
Trre8g02661 767 ProSiteProfiles Ankyrin repeat region circular profile. 707 738 - -
Trre8g02661 767 SMART ANK_2a 707 736 IPR002110 GO:0005515
Trre8g02661 767 SMART ANK_2a 674 703 IPR002110 GO:0005515
Trre8g02661 767 SMART PH_update 289 424 IPR001849 -
Trre8g02661 767 CDD ArfGap 476 591 - -
Trre8g02661 767 SUPERFAMILY PH domain-like 288 436 - -
Trre8g02661 767 Gene3D Arf GTPase activating protein 468 608 IPR038508 -
Trre8g02661 767 Pfam Ankyrin repeats (3 copies) 667 738 IPR002110 GO:0005515
Trre8g02661 767 Pfam Putative GTPase activating protein for Arf 475 597 IPR001164 GO:0005096
Trre8g02661 767 ProSiteProfiles Ankyrin repeat region circular profile. 674 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02661 Trre-Chr8 21946972 21958346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02661 478 591 C2H2 Transcription Factor Family AT3G07940 41.739 2.77e-18 84.0