Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02654 ATGGTAGCGATCATGCAAGAGCTGCAACAACATCATCATCATCATCAACAGCAGCAGCAGCAGCAGCAAAATCCCTCTGCACTGTTGCCACAACTCACCGCCAATCATCAATCCTCAACTACCGTCACTTCTCTTAGGTCACCATCTTCAACCTCCGCCGCCGCTCAATCCCACCGTCAATCCTTACTTCCTGCGCCGGTCGTGGCTGTTCTCCCGTCCGGGGAGCCGGTTTCGACGGCGCCGCTGAATTTTCAGTTGGCGAGAGTTCGGCTGTCGGACATTGGTCCTTATGACGGTGCACCGGCGGGGACTTATGTTAGGGCAATGGAAACACTGTGTTCTTCTCTGTTGAAGTACAATGCGGCTTTGATTGAATTAGGGAGTGAAGATACTGCTCTTATGCGATGTGGATTGGAAGGTGCTAGATTGTTCTTTAGGAGTAGAGCACATCTCGGTGTTGGAAAGGGAAGCCGTGGGGTTTACATGTATAGGGCAGGAAGAGCTTTGGAGGATTGGGATTTGTCTCCTCCTTGCATGGCTGATATTTTTAGGTGCATGGGGAAGGCTTCTCGTGTTGCTTTGTCTGCCATTGCAAGGCATCTGCGCCTCAGAAGCGATGTTTTCAACCAACTGCTTGATGATGCTCCATTGCCTGCTAACGAGGTGTCTTCTTCTGTTCTTGTTGGGACCTACTCGCATGCTTCTTTACAAAATGGAAAAGGTGCCATCGGAGGCGGTAAGCCTACCATCAATGGTGAAGTTGAGAAGGGGTTGTTGACCTTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGACCCCAATGGCCGCTGGTATCTGGCAGACAGTGGGTCTGGGCCTGGAGATCTTTTACTGATAACAGGCCGGGCGCTTAGCCATGCTACTGCAGGCCTACATCCAGCCGCATCATATAGAGCTTCTCCAGATTGTTTTATGAGTCCTAATAGTGGAGGAAGGACTTCACTTGCATATAGACTCATGCCACAGGGCAATGCTATATTAGATTGTTCTCCAATTGCAGCAGCTGGTCATGTTATTACTCAAAGCTATGTTCCAATATCTGTAAGCCAATTTATGGATGACCTTGCTGCTGAAGAACTGTTAGGCAGCAGATGTGATAATAATGACGTTGCACAAAGCAATGCGAACAAGGACCCGTCATTAAGAAGTGTTCTATCAGATCCTTTGTCTGGCTCATTTCTGGAAGATGCAATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCACACTGAGGAGAGTCATTGAAACATCAAGATGCACCCTCTGCAATGTTGATATTGAAACCGGCTCTCTGATCCCTAATCTTGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGATCGGAGGTTATTTCGTAATGCTGCTCTTCGAAAGCGGAGGAAAGAAATGGGTGAACCAATGGATCCAATCAGAAGAATGAACAGGGAAAATGGAGATTTTACTTCTGCTGATGGACTCCAGCGGGGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATCAAGGGTAACAGGAGAACACCCGAAAAATTTGTTGGGAAAGAAGCTGTCATTACGTCTCAATGCCTCAATGGCTGGTATTTGCTCAAGATTATTGGATCTGGAGAGAATGTCCGCCTGCAGTATCGTTCTCTCAGGAAGCTCTTAAACACACCAACAATGGAGGACCAGTGTCAGGTGCAGCCAGTTCAAAATAGCAGCTCTTAG 1761 0.4742 MVAIMQELQQHHHHHQQQQQQQQNPSALLPQLTANHQSSTTVTSLRSPSSTSAAAQSHRQSLLPAPVVAVLPSGEPVSTAPLNFQLARVRLSDIGPYDGAPAGTYVRAMETLCSSLLKYNAALIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDWDLSPPCMADIFRCMGKASRVALSAIARHLRLRSDVFNQLLDDAPLPANEVSSSVLVGTYSHASLQNGKGAIGGGKPTINGEVEKGLLTLISSDTPGLQVCDPNGRWYLADSGSGPGDLLLITGRALSHATAGLHPAASYRASPDCFMSPNSGGRTSLAYRLMPQGNAILDCSPIAAAGHVITQSYVPISVSQFMDDLAAEELLGSRCDNNDVAQSNANKDPSLRSVLSDPLSGSFLEDAMLVSCGHSFGGLTLRRVIETSRCTLCNVDIETGSLIPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGEPMDPIRRMNRENGDFTSADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGSGENVRLQYRSLRKLLNTPTMEDQCQVQPVQNSSS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02654 586 MobiDBLite consensus disorder prediction 35 58 - -
Trre8g02654 586 Gene3D - 168 374 IPR027443 -
Trre8g02654 586 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 85 577 - -
Trre8g02654 586 SUPERFAMILY RING/U-box 395 461 - -
Trre8g02654 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 463 IPR013083 -
Trre8g02654 586 SUPERFAMILY Clavaminate synthase-like 178 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02654 Trre-Chr8 21877034 21889776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02654 395 573 Plant U-box Gene Family AT5G05230 41.436 3.46e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02654 - - adu:107477161 906.746