Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02653 ATGTCACGAGGTTTTGATGCTGTTAACGATATCAACGATTCAAAGGAGCTTTGGAAACTTGCTGTTCGTGTTGAAGATTTATGGACTGTTACTCACCGTGGAAAAGAACACTTGGAGTTTCTCATTTTGGACAAACAGGGTGACCAGATTCAAGTTCTATTGCCTTCTGAACTATGTCCTTTGTGGAAATCTACATTAGTAGAAGGAGCTACTTATGTCATGAAAAACTTCAAAACTCAACCAAATGATTTTAACCTTAAGTATTGTATACACCCGTTTAAGCTTGTCTTTGTTGGAGGCGATGGAGGTACAACTATTAAACCTCAGTTAATCCCTGAGATTCCTGACTACAATTTAAACTTCAAACCTTTTGACGAGATCTTGGAAGGGAAATATCATGCTGAAGTTTTAGTTGACATCATTGGAGCTGTTCATGAAATCAAACCACCAAAGCAAACTATGGCTGCAAAAAAATGGCCAACATCTTTTAGTTTGAAGGATGCAGCTATGAACATCCTCCCTTGTGCTTTGTGGGGTGACCTTGGACAACAATTCATGAACCATTACAATTCCAAAACTGATGATGGACCAATGGTGGTTATTATCAAACATGCTCAAATTAGAGAACCTAAAGGTCTGTTTGATTTGACTATTTCAAATGCTTGGACTGGAACAAAGTTGTTATTAAATCCTGAGTTACAAGAAATCCAGGAATTTATCATCAGTTTGCCTGAAAATTTCAAATCTCCCACTCAAGCTGGTTTCCTTACCGTTACAACAAGTGTTGGACAGTCATCACAAAACTCCCAGGCCTCGCAGTATTCTATACCAACTCGATATTGTTATAATGCACCTCCTAAGCACTTGTCTGAACTGATGTCATGTGCAGAAGATGAAATTGTTACCACTGTTGGCACCCCTCATCATGTTTTGACTGCAAAACATGGGTGGTATTTAAGGTGTTGTGATCACTGCTCAAAAAGTATCATCACCAAGGTCCCTCCATACACATGCATTGATCCAAAACATGTGACACCTGAACCTAAGCTGAAATATAAGGTTGAAGTCGAAGTCCGTTATCAAGACCAAAAGATCCGAACTGTTTTATGGGACCGTGAATGTGAGGAATTAATCGGTCAATCTGCTGCTGAAGTGAAGGATGTTATGGTTCAGGAGGGTGAGTTTGATCCAACTGACTATCTCATTGCGCTTGACAAGCTTGTGGGAACAGAATTTGCACTCAAAGTCAAAGCACAACCCACTTTTAAAATGGTCTCACTTCTTAATTACAAGACAGATTCTGATATCATTCAGCATATTAAAGACCAAATCCCAAATTTGGAGACTACATCAAAATTAACCATCAACGAACAAGCATCACAACAGGTAATGAACCATCAATCATGGTCAATGTTGAGTTATAAATTTCATAACATGAACTTCCATTTCTTTAACGACATAGCATATACGATACTTCAAGATTCTCAACCATTAACTGCATCTGCTGCTGAAACCGAATTTGAAGTTCTGAAGTATGATACTCAAGATCTTTCAAATACTGGTGATTCAGACTTAACCCCTGTGTTGAACACAAAAGTTGGGAAGAGAACAGTGGCTGAGTCTTCCCCTGATGAAGCTAAATTTTCTACAAACAAAATTACCAAAAACATCAAACAAGAAGGGAGACCTAAGCGTAAATGA 1701 0.3845 MSRGFDAVNDINDSKELWKLAVRVEDLWTVTHRGKEHLEFLILDKQGDQIQVLLPSELCPLWKSTLVEGATYVMKNFKTQPNDFNLKYCIHPFKLVFVGGDGGTTIKPQLIPEIPDYNLNFKPFDEILEGKYHAEVLVDIIGAVHEIKPPKQTMAAKKWPTSFSLKDAAMNILPCALWGDLGQQFMNHYNSKTDDGPMVVIIKHAQIREPKGLFDLTISNAWTGTKLLLNPELQEIQEFIISLPENFKSPTQAGFLTVTTSVGQSSQNSQASQYSIPTRYCYNAPPKHLSELMSCAEDEIVTTVGTPHHVLTAKHGWYLRCCDHCSKSIITKVPPYTCIDPKHVTPEPKLKYKVEVEVRYQDQKIRTVLWDRECEELIGQSAAEVKDVMVQEGEFDPTDYLIALDKLVGTEFALKVKAQPTFKMVSLLNYKTDSDIIQHIKDQIPNLETTSKLTINEQASQQVMNHQSWSMLSYKFHNMNFHFFNDIAYTILQDSQPLTASAAETEFEVLKYDTQDLSNTGDSDLTPVLNTKVGKRTVAESSPDEAKFSTNKITKNIKQEGRPKRK 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02653 566 CDD RPA1_DBD_A_like 19 100 - -
Trre8g02653 566 MobiDBLite consensus disorder prediction 536 566 - -
Trre8g02653 566 Gene3D - 7 108 IPR012340 -
Trre8g02653 566 SUPERFAMILY Nucleic acid-binding proteins 118 246 IPR012340 -
Trre8g02653 566 Gene3D - 279 443 IPR012340 -
Trre8g02653 566 CDD RPA1_DBD_B_like 139 244 - -
Trre8g02653 566 Gene3D - 113 249 IPR012340 -
Trre8g02653 566 SUPERFAMILY Nucleic acid-binding proteins 4 97 IPR012340 -
Trre8g02653 566 SUPERFAMILY Nucleic acid-binding proteins 296 420 IPR012340 -
Trre8g02653 566 Pfam Domain of unknown function DUF223 41 137 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02653 Trre-Chr8 21873548 21876189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02653 1 396 Core DNA Replication Machinery Family AT5G08020 21.513 7.38e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02653 - - lang:109343677 290.812