Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre8g02645 | ATGAGTTCTCGGACCGGTAGGGGAACTTCTGTCAGAGGTTACACCCGGCGGAGGAAGGCAGGGTTGGACCTTGACCTTAACTTACCCGCTGGTGAGAATCCGGCTGGTGAAAATCGCGAGCAGGAGGGACCTTCGATTCAGTTGGGGCTTCGAGAAGTTGAAGTTCAAGCTAACCCACAACAGCCGATTGTATTTCAAGAAGTTCCTATGATTGATGTGGAGGAAATTGATGACGATGATGTTATTGAATCTTCCCCGAGGGCTTTTGCTGAGGCTAAAAACAATTCTAGAAGAAATCGCGGGAGGACTATAGTTGATGTGGATTTAGAAGAGCAGACTAGGGTTAGCAACAATAATCGCTACAAACGCAGAAGAGAACCTCCAAATCAAACAATTATCAATTGTGATCTTTATATAAATTTGGAAGGCAGTAGCAGCTCTACGATGGAAACTGTCAAAAAGCCACCCGAGCCTCCAAAGGAACCTGTCTTCAGCTGTCCTATATGCATGGGCCCTTTGGTGGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGGCTTGTATCAAGGCTGCTATAAGTGCTCAGGCTAAATGTCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCAACAACTGGTTAA | 666 | 0.4489 | MSSRTGRGTSVRGYTRRRKAGLDLDLNLPAGENPAGENREQEGPSIQLGLREVEVQANPQQPIVFQEVPMIDVEEIDDDDVIESSPRAFAEAKNNSRRNRGRTIVDVDLEEQTRVSNNNRYKRRREPPNQTIINCDLYINLEGSSSSTMETVKKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQAKCPTCRKKITVKELIRVFLPTTG | 221 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre8g02645 | 221 | ProSitePatterns | Zinc finger RING-type signature. | 181 | 190 | IPR017907 | - | |
Trre8g02645 | 221 | PANTHER | ELFLESS, ISOFORM B | 1 | 220 | - | - | |
Trre8g02645 | 221 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 219 | IPR013083 | - | |
Trre8g02645 | 221 | SMART | ring_2 | 166 | 203 | IPR001841 | - | |
Trre8g02645 | 221 | ProSiteProfiles | Zinc finger RING-type profile. | 166 | 204 | IPR001841 | - | |
Trre8g02645 | 221 | Pfam | Zinc finger, C3HC4 type (RING finger) | 166 | 203 | - | - | |
Trre8g02645 | 221 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Trre8g02645 | 221 | SUPERFAMILY | RING/U-box | 165 | 210 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre8g02645 | Trre-Chr8 | 21829535 | 21831919 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre8g02645 | 16 | 220 | C3H Transcription Factor Family | AT5G48655 | 52.174 | 1.97e-50 | 161 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre8g02645 | K22651 | - | cave:132188663 | 285.034 |