Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02645 ATGAGTTCTCGGACCGGTAGGGGAACTTCTGTCAGAGGTTACACCCGGCGGAGGAAGGCAGGGTTGGACCTTGACCTTAACTTACCCGCTGGTGAGAATCCGGCTGGTGAAAATCGCGAGCAGGAGGGACCTTCGATTCAGTTGGGGCTTCGAGAAGTTGAAGTTCAAGCTAACCCACAACAGCCGATTGTATTTCAAGAAGTTCCTATGATTGATGTGGAGGAAATTGATGACGATGATGTTATTGAATCTTCCCCGAGGGCTTTTGCTGAGGCTAAAAACAATTCTAGAAGAAATCGCGGGAGGACTATAGTTGATGTGGATTTAGAAGAGCAGACTAGGGTTAGCAACAATAATCGCTACAAACGCAGAAGAGAACCTCCAAATCAAACAATTATCAATTGTGATCTTTATATAAATTTGGAAGGCAGTAGCAGCTCTACGATGGAAACTGTCAAAAAGCCACCCGAGCCTCCAAAGGAACCTGTCTTCAGCTGTCCTATATGCATGGGCCCTTTGGTGGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGGCTTGTATCAAGGCTGCTATAAGTGCTCAGGCTAAATGTCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCAACAACTGGTTAA 666 0.4489 MSSRTGRGTSVRGYTRRRKAGLDLDLNLPAGENPAGENREQEGPSIQLGLREVEVQANPQQPIVFQEVPMIDVEEIDDDDVIESSPRAFAEAKNNSRRNRGRTIVDVDLEEQTRVSNNNRYKRRREPPNQTIINCDLYINLEGSSSSTMETVKKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQAKCPTCRKKITVKELIRVFLPTTG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02645 221 ProSitePatterns Zinc finger RING-type signature. 181 190 IPR017907 -
Trre8g02645 221 PANTHER ELFLESS, ISOFORM B 1 220 - -
Trre8g02645 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 219 IPR013083 -
Trre8g02645 221 SMART ring_2 166 203 IPR001841 -
Trre8g02645 221 ProSiteProfiles Zinc finger RING-type profile. 166 204 IPR001841 -
Trre8g02645 221 Pfam Zinc finger, C3HC4 type (RING finger) 166 203 - -
Trre8g02645 221 MobiDBLite consensus disorder prediction 1 46 - -
Trre8g02645 221 SUPERFAMILY RING/U-box 165 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02645 Trre-Chr8 21829535 21831919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02645 16 220 C3H Transcription Factor Family AT5G48655 52.174 1.97e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02645 K22651 - cave:132188663 285.034