Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02623 ATGTTTTATTACACTAACACTAAACAATGTTTCATTTTGTTTAATTTTAATGTGATTGCAAATGACGAGTTACACAATGCTTATAATTTGGCATTTTTAGCTGCAAATAACGAGTTACACAAGAATGAAACTGATGATTGTATGAGTGGTACTAGCGCGATTACGGGGTTGGTGATAGGGGAAACACTTTATGTTGCAAATGTCTGTGATTCGAGGGTGATGTTGGCTGTTAAATATGAGAATAAAATTGTCGCTGGGGATTTGTCTTCTGATCAAACACCTTTTAGGAGAGATGAATATGAGAGAGTAAAGTTTTGTGGTGCTAGGTTGTTGAGTGTTGATCAAGTTGAAGAGCATAAGGATTCAAATATTCAAATTTGGGTTTTGATCGCCGTTTATATTTAA 405 0.3457 MFYYTNTKQCFILFNFNVIANDELHNAYNLAFLAANNELHKNETDDCMSGTSAITGLVIGETLYVANVCDSRVMLAVKYENKIVAGDLSSDQTPFRRDEYERVKFCGARLLSVDQVEEHKDSNIQIWVLIAVYI 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02623 134 ProSiteProfiles PPM-type phosphatase domain profile. 1 134 IPR001932 -
Trre8g02623 134 SUPERFAMILY PP2C-like 14 109 IPR036457 -
Trre8g02623 134 Gene3D - 8 128 IPR036457 -
Trre8g02623 134 Pfam Protein phosphatase 2C 23 107 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02623 Trre-Chr8 21540384 21540788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02623 22 127 PP2C-type Phosphatase Gene Family AT3G06270 65.094 6.35e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02623 - - gmx:100777670 147.132