Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02617 ATGTACTGGAGGAGAATACAGTGCAGAGATCGGAGATGGGCTTTGTTGTTGCAGCCATCAAAATACTTCTATAGGCCAAAATCATCTGATCATCATTGCTTTCAGTCTTTATCACCAAAGACCACCGTGAAAGAATATTCTTCACACGGTGGTATTATTAGGAGAGATGTTTTAGGTTCAGATTCATCTAGTCATGTTTCATCTAGACATAGTTTTACTGGTCTAAACAGAAGGCCTAGTTTTTGTCTTAGGAGTACTCAGATACATGCTTTTAGTTCTAAAAGCGATGGAAGTAATGCAAGTGAGAATAAACAAGTACATGTTAATGACGGTGCTAATTTTGATAAGGGAAAGAATCAGATAGATAAGTCTGGGGAAGATGTTAAATGCAGCAATGCACATGCACGGCTTGGAGTACAGGATCAAGAGGAATGGCTTAATAATGAAAAGCTTGCTGTAGAAAGTAAAAGGAAAGAATCACCATTTTTGACAAGAAAAGACAAGTTTAAAAATGAGTTTTTGAGAAGAATTGTTCCGTGGGAGAAAATAAACATTTCATGGGACACATTTCCTTATCACATACATGAGCATACGAAAAATCTTCTGACGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTATCTTGTTTTGGCTCTCGCCTTGCATCTTCAAGTGGAAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTCTATCGCGAGAGAGTAGTTAGAGCTCTTGCACAAGATTTACAAGTTCCGTTGTTGGTGCTTGACAGCAGCATCCTTGCTCCTTATGATCTTGACGATGATCAATCATCAGACTATGAGTCTGATGATCCAGAATCTGGGGAAGAGGGTGCTCTAGATTCAGAGAATGAAGATGATAATGATGCTAGTAATGAAGAAGAGTGGTCTAGCGGTGCTGAAGTGAAGTCAGATGCAAGTGATAATGATGATGCAATAGCATCTGCTGAAGCAGCCCTTAAGAAAGTGAAAGCAGCTGTTCAGAAACTTGTCCCTTACAATGTTGATGAATTTGAGAAGATGGTGACTGGTGGAGATGACCGTTCCGAGTCATCGAGTTCTAATGATGCCAAGTCTTCTGATAAATCTGAAAGTCAGCTAAGAAAAGGTGACCGCGTGAAGTACATTGGGCCTTCTATTGAATTTACAGACGATGATAGGGATGTAACTTTAAATACTGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATCGAGTTGCTGTTATCTTGGATAGTAATGAAGAGAGGGCTAATGCGAGTGAGGTTGAAAACCTTAACGACGATCGCAAAAAATCATCAGTTTATTGGATAGATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATAGCAATGGAGGCTTTATGTGAGGTTTTGAATTCCAAACAGCCTCTTATAGTCTATTTTCCGGATAGTTCACAGTGGTTGCATAAATCAGTTCCTAAGTCAAGCCGAAATGAGTTCTTTAACAAGGTTGAGGAGATTTTTGACCGGTTATCTGGTCCGGTAGTATTGATTTGCGGGCAAAACAAAGTTCAATCAGGCTCAAAGGAGAAAGAAAAATTTACGATGATACTTCCAAACTTCGGACGTGTTGCTAAGCTGCCTCTTTCTTTGAAGCACCTGACCGATGGATTCAAAGGGGGAAAGACATCAGAAGAGGATGAAATTAACAAGCTCTTCTCGAATGTTTTGAGTGTACATCCACCTAAGGAGGAGAATCTACAGACAGTATTCAAAAAACAACTCGAGGAGGACAGGAAAATTGTGATTTCACGTAGTAATTTGAATGAACTACGAAAGGTTCTTGAAGAAAATCATCTATCGTGCGTCGACCTCTTGCATGTGAATACTGATGGCATCATTTTAACAAAACAAAAAGCTGAAAAAGTGGTAGGCTGGGCAAAAAATCATCACTTATCATCATGCTTGCATCCTTCTATTAAAGGAGAAAAATTGTTCATACCTCGCGAAAGTCTTGAAATTGCAATCTCAAGGATGAAAGACATGGAAACTATGTCAAGAAAACCTTCTCAGAACCTCAAGAACCTTGCGAAGGACGAGTTCGAGAGCAATTTCATTTCATCTGTTGTAGCTCCTGGTGAAATTGGTGTACAGTTTGATGACATAGGTGCTCTTGAAGATGTTAAGAAGGCACTTCAAGAACTTGTGATTCTTCCAATGAGAAGGCCTGAGCTTTTCTCTCATGGAAACCTGTTGCGGCCCTGCAAAGGAATATTACTCTTTGGTCCTCCTGGAACTGGGAAAACCCTTCTGGCCAAGGCACTTGCGACAGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACGTCAAAGTGGTTTGGAGATGCCGAGAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAGCTTGCACCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGAGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCGGCGTGGGATGGATTGAGGTCAAAAGAAAATCAGAGAATCCTCATTCTTGGAGCAACAAACCGGCCATTTGACCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCAGATGCTGAAAATCGAAAGAAGATTCTAAGAATATTTCTTGCAAAAGAAAATCTGAATTCTGATTTTCAGTATGACAAACTTGCTAACTTGACTGAAGGTTACTCTGGCAGTGATTTGAAGAACCTCTGTGTTGCTGCAGCATATAGACCGGTTCAAGAGCTCTTAGAAGAAGAAAAGAAGAGAGACGATGGTACTACAACTTCAGTATTAAGGCCTCTTAATTTGGATGATTTTGTACAAGCAAAATCCAAGGTGGGTCCATCTGTTGCGTACGATGCAACAAGCATGAATGAGCTAAGGAAGTGGAATGAAATGTATGGTGAAGGCGGTAGTAGAACAAAATCACCATTTGGATTCGGGAACCGATCTTGA 3054 0.4044 MYWRRIQCRDRRWALLLQPSKYFYRPKSSDHHCFQSLSPKTTVKEYSSHGGIIRRDVLGSDSSSHVSSRHSFTGLNRRPSFCLRSTQIHAFSSKSDGSNASENKQVHVNDGANFDKGKNQIDKSGEDVKCSNAHARLGVQDQEEWLNNEKLAVESKRKESPFLTRKDKFKNEFLRRIVPWEKINISWDTFPYHIHEHTKNLLTECAASHLRHNKLSCFGSRLASSSGRILLQSIPGTELYRERVVRALAQDLQVPLLVLDSSILAPYDLDDDQSSDYESDDPESGEEGALDSENEDDNDASNEEEWSSGAEVKSDASDNDDAIASAEAALKKVKAAVQKLVPYNVDEFEKMVTGGDDRSESSSSNDAKSSDKSESQLRKGDRVKYIGPSIEFTDDDRDVTLNTGQRGEVYEVNGDRVAVILDSNEERANASEVENLNDDRKKSSVYWIDVKDIENDLDAQSQDCYIAMEALCEVLNSKQPLIVYFPDSSQWLHKSVPKSSRNEFFNKVEEIFDRLSGPVVLICGQNKVQSGSKEKEKFTMILPNFGRVAKLPLSLKHLTDGFKGGKTSEEDEINKLFSNVLSVHPPKEENLQTVFKKQLEEDRKIVISRSNLNELRKVLEENHLSCVDLLHVNTDGIILTKQKAEKVVGWAKNHHLSSCLHPSIKGEKLFIPRESLEIAISRMKDMETMSRKPSQNLKNLAKDEFESNFISSVVAPGEIGVQFDDIGALEDVKKALQELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRKKILRIFLAKENLNSDFQYDKLANLTEGYSGSDLKNLCVAAAYRPVQELLEEEKKRDDGTTTSVLRPLNLDDFVQAKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKSPFGFGNRS 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02617 1017 Gene3D - 894 979 - -
Trre8g02617 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 722 983 IPR027417 -
Trre8g02617 1017 MobiDBLite consensus disorder prediction 352 380 - -
Trre8g02617 1017 Pfam AAA+ lid domain 915 951 IPR041569 -
Trre8g02617 1017 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 720 896 - -
Trre8g02617 1017 MobiDBLite consensus disorder prediction 271 304 - -
Trre8g02617 1017 MobiDBLite consensus disorder prediction 269 318 - -
Trre8g02617 1017 ProSitePatterns AAA-protein family signature. 865 884 IPR003960 GO:0005524|GO:0016887
Trre8g02617 1017 Pfam ATPase family associated with various cellular activities (AAA) 762 892 IPR003959 GO:0005524|GO:0016887
Trre8g02617 1017 SMART AAA_5 758 895 IPR003593 GO:0016887
Trre8g02617 1017 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 168 1008 - -
Trre8g02617 1017 Gene3D - 721 997 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02617 Trre-Chr8 21436506 21450686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02617 721 953 Calmodulin-binding Proteins AT3G56690 38.983 6.31e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02617 - - gmx:100812718 1607.81