Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02616 ATGTACTGGAGGAGAATACAGTGCAGAGATCGGAGATGGGCTTTGTTGTTGCAGCCATCAAAATACTTCTATAGGCCAAAATCATCTGATCATCATTGCTTTCAGTCTTTATCACCAAAGACCACCGTGAAAGAATATTCTTCACACGGTGGTATTATTAGGAGAGATGTTTTAGGTTCAGATTCATCTAGTCATGTTTCATCTAGACATAGTTTTACTGGTCTAAACAGAAGGCCTAGTTTTTGTCTTAGGAGTACTCAGATACATGCTTTTAGTTCTAAAAGCGATGGAAGTAATGCAAGTGAGAATAAACAAGTACATGTTAATGACGGTGCTAATTTTGATAAGGGAAAGAATCAGATAGATAAGTCTGGGGAAGATGTTAAATGCAGCAATGCACATGCACGGCTTGGAGTACAGGATCAAGAGGAATGGCTTAATAATGAAAAGCTTGCTGTAGAAAGTAAAAGGAAAGAATCACCATTTTTGACAAGAAAAGACAAGTTTAAAAATGAGTTTTTGAGAAGAATTGTTCCGTGGGAGAAAATAAACATTTCATGGGACACATTTCCTTATCACATACATGAGCATACGAAAAATCTTCTGACGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTATCTTGTTTTGGCTCTCGCCTTGCATCTTCAAGTGGAAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTCTATCGCGAGAGAGTAGTTAGAGCTCTTGCACAAGATTTACAAGTTCCGTTGTTGGTGCTTGACAGCAGCATCCTTGCTCCTTATGATCTTGACGATGATCAATCATCAGACTATGAGTCTGATGATCCAGAATCTGGGGAAGAGGGTGCTCTAGATTCAGAGAATGAAGATGATAATGATGCTAGTAATGAAGAAGAGTGGTCTAGCGGTGCTGAAGTGAAGTCAGATGCAAGTGATAATGATGATGCAATAGCATCTGCTGAAGCAGCCCTTAAGAAAGTGAAAGCAGCTGTTCAGAAACTTGTCCCTTACAATGTTGATGAATTTGAGAAGATGGTGACTGGTGGAGATGACCGTTCCGAGTCATCGAGTTCTAATGATGCCAAGTCTTCTGATAAATCTGAAAGTCAGCTAAGAAAAGGTGACCGCGTGAAGTACATTGGGCCTTCTATTGAATTTACAGACGATGATAGGATTTCACTGGGGAAGATACCAACGTCTGATGGTCCAACTAATGCTTATATTATTATGGAAAGGGATGTAACTTTAAATACTGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATCGAGTTGCTGTTATCTTGGATAGTAATGAAGAGAGGGCTAATGCGAGTGAGGTTGAAAACCTTAACGACGATCGCAAAAAATCATCAGTTTATTGGATAGATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATAGCAATGGAGGCTTTATGTGAGGTTTTGAATTCCAAACAGCCTCTTATAGTCTATTTTCCGGATAGTTCACAGTGGTTGCATAAATCAGTTCCTAAGTCAAGCCGAAATGAGTTCTTTAACAAGGTTGAGGAGATTTTTGACCGGTTATCTGGTCCGGTAGTATTGATTTGCGGGCAAAACAAAGTTCAATCAGGCTCAAAGGAGAAAGAAAAATTTACGATGATACTTCCAAACTTCGGACGTGTTGCTAAGCTGCCTCTTTCTTTGAAGCACCTGACCGATGGATTCAAAGGGGGAAAGACATCAGAAGAGGATGAAATTAACAAGCTCTTCTCGAATGTTTTGAGTGTACATCCACCTAAGGAGGAGAATCTACAGACAGTATTCAAAAAACAACTCGAGGAGGACAGGAAAATTGTGATTTCACGTAGTAATTTGAATGAACTACGAAAGGTTCTTGAAGAAAATCATCTATCGTGCGTCGACCTCTTGCATGTGAATACTGATGGCATCATTTTAACAAAACAAAAAGCTGAAAAAGTGGTAGGCTGGGCAAAAAATCATCACTTATCATCATGCTTGCATCCTTCTATTAAAGGAGAAAAATTGTTCATACCTCGCGAAAGTCTTGAAATTGCAATCTCAAGGATGAAAGACATGGAAACTATGTCAAGAAAACCTTCTCAGAACCTCAAGAACCTTGCGAAGGACGAGTTCGAGAGCAATTTCATTTCATCTGTTGTAGCTCCTGGTGAAATTGGTGTACAGTTTGATGACATAGGTGCTCTTGAAGATGTTAAGAAGGCACTTCAAGAACTTGTGATTCTTCCAATGAGAAGGCCTGAGCTTTTCTCTCATGGAAACCTGTTGCGGCCCTGCAAAGGAATATTACTCTTTGGTCCTCCTGGAACTGGGAAAACCCTTCTGGCCAAGGCACTTGCGACAGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACGTCAAAGTGGTTTGGAGATGCCGAGAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAGCTTGCACCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGAGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCGGCGTGGGATGGATTGAGGTCAAAAGAAAATCAGAGAATCCTCATTCTTGGAGCAACAAACCGGCCATTTGACCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCAGATGCTGAAAATCGAAAGAAGATTCTAAGAATATTTCTTGCAAAAGAAAATCTGAATTCTGATTTTCAGTATGACAAACTTGCTAACTTGACTGAAGGTTACTCTGGCAGTGATTTGAAGAACCTCTGTGTTGCTGCAGCATATAGACCGGTTCAAGAGCTCTTAGAAGAAGAAAAGAAGAGAGACGATGGTACTACAACTTCAGTATTAAGGCCTCTTAATTTGGATGATTTTGTACAAGCAAAATCCAAGGTGGGTCCATCTGTTGCGTACGATGCAACAAGCATGAATGAGCTAAGGAAGTGGAATGAAATGTATGGTGAAGGCGGTAGTAGAACAAAATCACCATTTGGATTCGGGAACCGATCTTGA 3117 0.4039 MYWRRIQCRDRRWALLLQPSKYFYRPKSSDHHCFQSLSPKTTVKEYSSHGGIIRRDVLGSDSSSHVSSRHSFTGLNRRPSFCLRSTQIHAFSSKSDGSNASENKQVHVNDGANFDKGKNQIDKSGEDVKCSNAHARLGVQDQEEWLNNEKLAVESKRKESPFLTRKDKFKNEFLRRIVPWEKINISWDTFPYHIHEHTKNLLTECAASHLRHNKLSCFGSRLASSSGRILLQSIPGTELYRERVVRALAQDLQVPLLVLDSSILAPYDLDDDQSSDYESDDPESGEEGALDSENEDDNDASNEEEWSSGAEVKSDASDNDDAIASAEAALKKVKAAVQKLVPYNVDEFEKMVTGGDDRSESSSSNDAKSSDKSESQLRKGDRVKYIGPSIEFTDDDRISLGKIPTSDGPTNAYIIMERDVTLNTGQRGEVYEVNGDRVAVILDSNEERANASEVENLNDDRKKSSVYWIDVKDIENDLDAQSQDCYIAMEALCEVLNSKQPLIVYFPDSSQWLHKSVPKSSRNEFFNKVEEIFDRLSGPVVLICGQNKVQSGSKEKEKFTMILPNFGRVAKLPLSLKHLTDGFKGGKTSEEDEINKLFSNVLSVHPPKEENLQTVFKKQLEEDRKIVISRSNLNELRKVLEENHLSCVDLLHVNTDGIILTKQKAEKVVGWAKNHHLSSCLHPSIKGEKLFIPRESLEIAISRMKDMETMSRKPSQNLKNLAKDEFESNFISSVVAPGEIGVQFDDIGALEDVKKALQELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRKKILRIFLAKENLNSDFQYDKLANLTEGYSGSDLKNLCVAAAYRPVQELLEEEKKRDDGTTTSVLRPLNLDDFVQAKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKSPFGFGNRS 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02616 1038 Gene3D - 915 1000 - -
Trre8g02616 1038 ProSitePatterns AAA-protein family signature. 886 905 IPR003960 GO:0005524|GO:0016887
Trre8g02616 1038 SMART AAA_5 779 916 IPR003593 GO:0016887
Trre8g02616 1038 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 741 917 - -
Trre8g02616 1038 Pfam AAA+ lid domain 936 972 IPR041569 -
Trre8g02616 1038 MobiDBLite consensus disorder prediction 352 380 - -
Trre8g02616 1038 MobiDBLite consensus disorder prediction 271 304 - -
Trre8g02616 1038 MobiDBLite consensus disorder prediction 269 318 - -
Trre8g02616 1038 Pfam ATPase family associated with various cellular activities (AAA) 783 913 IPR003959 GO:0005524|GO:0016887
Trre8g02616 1038 Gene3D - 742 1018 IPR027417 -
Trre8g02616 1038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 1004 IPR027417 -
Trre8g02616 1038 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 168 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02616 Trre-Chr8 21436506 21450686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02616 742 974 Calmodulin-binding Proteins AT3G56690 38.983 7.60e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02616 - - gmx:100802939 1618.98