Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02615 ATGGCCAAGTTAAGCAAGAAATCCGCCACTAAGGTTGAAGATGCTCCTGTTGTTGTTTCTCCAGCCAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGTGAAGGCAGTGAGTGCTAAGAAGCAAAAGTTAGAAGAGGTTAAGCAAAAGAAGGAAGCTGAGTTGAAGAAAGTTAAGAAGGAGGAAAGTAGTTCAGAGGAAGATTCATCTGATGAGTCTGAGGATGAGAAACCTGTTGCAAAGGCTGCTGCTCCCGCTAAAAACACCCCAGCTAAAAATGGGAGTGTGAAGAAAGCTGCCAAGCCAGTTTCCAGCTCAGATGAATCTGACGAGGACGACTCTTCTGAAGAGGAAGAAGCTAGTTCAAAGAAGCCAACTAAAGTTGAGGCTGCTAAGGCTACTAAGGTGGTGCCAAAGAAGGAGGAAAGTTCCGATGATTCAGATTCAGAAGATGATTCATCTGAAGATGAGAAACCTGCAGCTAAAGCTGTTCCTTCTAAAAATGTGAGTGCCCCTGCAAAGAAAGAAGCTAGTTCTTCTGATGATGATTCTTCTGATGAAGACTCTGATGAAGATGAAGCTCCAAAGCCGAAGGCTGCTGCTGCTGCAGCCAATAACGGATCTGTTCCTGCAAAGAAGCCTGCTGAAAGCTCTGAATCTGATAGCTCGGATTCTGATTCCGATGATGGCAAGAATAAGAAAAAACCTGCAGCTACTGTCCCCAAAACTGAAAGCTCAGATGATGATTCAAGTGAGGAAAGCTCTGATGAAGAGGATACAAAGCCTGCCCCACCTGCCAAGTCTGCTGCTGTTGCAAAAAAGAAAGAGGAAGATAGCTCAGATTCTGATGAGGATAGCAGCTCTGATGAAGACAATAAAACCAAAAATGTATCTAATGGAAACAAGAAACCCGTCTCTGCTGCAAAGAAAGAGGATAAAATGGAAGTTGACAATGATGATAGCAGTGATAGTTCTGATGACAGTGAGGAGGAGAGTGAGGAAGAACCAGCCAAAACTCCTCAGAAAAAGGTCAAAGATGTGGAGATGGTTGATGCTAGCAAATCTGCAAAAAAAGCTCCTACTACCCCAGCTACACCCAATGAGAATAGCGGTTCAAAGACATTGTTTTGTGGAAACTTGGCATTTAGTGTGCAGCGAGCTGATATAGAAAATTTCTTCCAAGATTGTGGAGAGGTTGTTGATGTTCGTCTTGCTACTGACGAGGATGGAAGGTTCAAAGGATTTGGACATATTGAGTTTGCAACTGCAGAGGCAGCCCGAAGTGCACTTGAGTTGAATGGGCAAGAATTGTTGGGACGTGATGTCCGACTAGATTTAGCCCGGGAGAGGGGGGCTTATACTCCTAATAATAACAGCAACTACTCAGCCCAAAGCGGTGGAACAGGCCAATCTCAAACAATATTTGTCAGGGGTTTTGATAAAAGTCTAGGGGAGGATGAGCTAAGATCAAAATTGGAACAGCATTTTGGTTCTTGTGGGGAAGTTACAAGGGTGTCAATCCCCAAAGATTTTGATTCTGGTTATGTCAAAGGGTTTGCATACATGGACTTCAAAGATCTTGACAGCAAGAACAAAGCTCTGGAACTCCATGAGAGTGAACTTGAAGGTTATACTTTGTCAGTTGATGAAGCCAAACCTAGAGATAGTCAGGGATCCGGAGGTGGAAGGAGTGGTGGATTTGGTGGAAGGAGTGGTGGAAGGGGTGGTCGATTTGGTGGAAGGGATAGTGGCGGGAGAGGAAGAGGTCGATTTGGTGGAAGGGATAGTGGCGGTAGAGGAAGAGGTCGATTTGGTGGAAGGGATGGTGGCCGAGGATTCAACAAACCAAGCTTTGCTGCATCAGGAAAAAAGACAACTTTTGGTGACGACTAG 1899 0.4497 MAKLSKKSATKVEDAPVVVSPAKSGKKGKRQAEEEVKAVSAKKQKLEEVKQKKEAELKKVKKEESSSEEDSSDESEDEKPVAKAAAPAKNTPAKNGSVKKAAKPVSSSDESDEDDSSEEEEASSKKPTKVEAAKATKVVPKKEESSDDSDSEDDSSEDEKPAAKAVPSKNVSAPAKKEASSSDDDSSDEDSDEDEAPKPKAAAAAANNGSVPAKKPAESSESDSSDSDSDDGKNKKKPAATVPKTESSDDDSSEESSDEEDTKPAPPAKSAAVAKKKEEDSSDSDEDSSSDEDNKTKNVSNGNKKPVSAAKKEDKMEVDNDDSSDSSDDSEEESEEEPAKTPQKKVKDVEMVDASKSAKKAPTTPATPNENSGSKTLFCGNLAFSVQRADIENFFQDCGEVVDVRLATDEDGRFKGFGHIEFATAEAARSALELNGQELLGRDVRLDLARERGAYTPNNNSNYSAQSGGTGQSQTIFVRGFDKSLGEDELRSKLEQHFGSCGEVTRVSIPKDFDSGYVKGFAYMDFKDLDSKNKALELHESELEGYTLSVDEAKPRDSQGSGGGRSGGFGGRSGGRGGRFGGRDSGGRGRGRFGGRDSGGRGRGRFGGRDGGRGFNKPSFAASGKKTTFGDD 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02615 632 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 493 608 - -
Trre8g02615 632 FunFam Nucleolin 2 350 459 - -
Trre8g02615 632 Gene3D - 459 590 IPR012677 -
Trre8g02615 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 555 IPR000504 GO:0003723
Trre8g02615 632 Gene3D - 307 458 IPR012677 -
Trre8g02615 632 MobiDBLite consensus disorder prediction 547 632 - -
Trre8g02615 632 MobiDBLite consensus disorder prediction 320 336 - -
Trre8g02615 632 Coils Coil 29 70 - -
Trre8g02615 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 548 IPR000504 GO:0003723
Trre8g02615 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 444 IPR000504 GO:0003723
Trre8g02615 632 MobiDBLite consensus disorder prediction 583 610 - -
Trre8g02615 632 SUPERFAMILY RNA-binding domain, RBD 365 472 IPR035979 GO:0003676
Trre8g02615 632 SMART rrm1_1 376 447 IPR000504 GO:0003723
Trre8g02615 632 SMART rrm1_1 475 551 IPR000504 GO:0003723
Trre8g02615 632 MobiDBLite consensus disorder prediction 120 146 - -
Trre8g02615 632 MobiDBLite consensus disorder prediction 219 250 - -
Trre8g02615 632 MobiDBLite consensus disorder prediction 26 68 - -
Trre8g02615 632 SUPERFAMILY RNA-binding domain, RBD 471 587 IPR035979 GO:0003676
Trre8g02615 632 CDD RRM2_NUCLs 475 553 IPR034350 -
Trre8g02615 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 375 451 IPR000504 GO:0003723
Trre8g02615 632 MobiDBLite consensus disorder prediction 1 375 - -
Trre8g02615 632 MobiDBLite consensus disorder prediction 337 355 - -
Trre8g02615 632 CDD RRM1_NUCLs 376 452 IPR034349 -
Trre8g02615 632 MobiDBLite consensus disorder prediction 360 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02615 Trre-Chr8 21425358 21429688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02615 373 549 Eukaryotic Initiation Factors Gene Family AT4G34110 27.374 2.24e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02615 K11294 - gmx:100786132 417.542