Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02614 ATGGCCAAGTTAAGCAAGAAATCCGCCACTAAGGTTGAAGATGCTCCTGTTGTTGTTTCTCCAGCCAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGTGAAGGCAGTGAGTGCTAAGAAGCAAAAGTTAGAAGAGGTTAAGCAAAAGAAGGAAGCTGAGTTGAAGAAAGTTAAGAAGGAGGAAAGTAGTTCAGAGGAAGATTCATCTGATGAGTCTGAGGATGAGAAACCTGTTGCAAAGGCTGCTGCTCCCGCTAAAAACACCCCAGCTAAAAATGGGAGTGTGAAGAAAGCTGCCAAGCCAGTTTCCAGCTCAGATGAATCTGACGAGGACGACTCTTCTGAAGAGGAAGAAGCTAGTTCAAAGAAGCCAACTAAAGTTGAGGCTGCTAAGGCTACTAAGGTGGTGCCAAAGAAGGAGGAAAGTTCCGATGATTCAGATTCAGAAGATGATTCATCTGAAGATGAGAAACCTGCAGCTAAAGCTGTTCCTTCTAAAAATGTGAGTGCCCCTGCAAAGAAAGAAGCTAGTTCTTCTGATGATGATTCTTCTGATGAAGACTCTGATGAAGATGAAGCTCCAAAGCCGAAGGCTGCTGCTGCTGCAGCCAATAACGGATCTGTTCCTGCAAAGAAGCCTGCTGAAAGCTCTGAATCTGATAGCTCGGATTCTGATTCCGATGATGGCAAGAATAAGAAAAAACCTGCAGCTACTGTCCCCAAAACTGAAAGCTCAGATGATGATTCAAGTGAGGAAAGCTCTGATGAAGAGGATACAAAGCCTGCCCCACCTGCCAAGTCTGCTGCTGTTGCAAAAAAGAAAGAGGAAGATAGCTCAGATTCTGATGAGGATAGCAGCTCTGATGAAGACAATAAAACCAAAAATGTATCTAATGGAAACAAGAAACCCGTCTCTGCTGCAAAGAAAGAGGTTAGTGAATCAGAGAGTGACTCCTCTGATGATGTGGATAAAATGGAAGTTGACAATGATGATAGCAGTGATAGTTCTGATGACAGTGAGGAGGAGAGTGAGGAAGAACCAGCCAAAACTCCTCAGAAAAAGGTCAAAGATGTGGAGATGGTTGATGCTAGCAAATCTGCAAAAAAAGCTCCTACTACCCCAGCTACACCCAATGAGAATAGCGGTTCAAAGACATTGTTTTGTGGAAACTTGGCATTTAGTGTGCAGCGAGCTGATATAGAAAATTTCTTCCAAGATTGTGGAGAGGTTGTTGATGTTCGTCTTGCTACTGACGAGGATGGAAGGTTCAAAGGATTTGGACATATTGAGTTTGCAACTGCAGAGGCAGCCCGAAGTGCACTTGAGTTGAATGGGCAAGAATTGTTGGGACGTGATGTCCGACTAGATTTAGCCCGGGAGAGGGGGGCTTATACTCCTAATAATAACAGCAACTACTCAGCCCAAAGCGGTGGAACAGGCCAATCTCAAACAATATTTGTCAGGGGTTTTGATAAAAGTCTAGGGGAGGATGAGCTAAGATCAAAATTGGAACAGCATTTTGGTTCTTGTGGGGAAGTTACAAGGGTGTCAATCCCCAAAGATTTTGATTCTGGTTATGTCAAAGGGTTTGCATACATGGACTTCAAAGATCTTGACAGCAAGAACAAAGCTCTGGAACTCCATGAGAGTGAACTTGAAGGTTATACTTTGTCAGTTGATGAAGCCAAACCTAGAGATAGTCAGGGATCCGGAGGTGGAAGGAGTGGTGGATTTGGTGGAAGGAGTGGTGGAAGGGGTGGTCGATTTGGTGGAAGGGATAGTGGCGGGAGAGGAAGAGGTCGATTTGGTGGAAGGGATAGTGGCGGTAGAGGAAGAGGTCGATTTGGTGGAAGGGATGGTGGCCGAGGATTCAACAAACCAAGCTTTGCTGCATCAGGAAAAAAGACAACTTTTGGTGACGACTAG 1935 0.4496 MAKLSKKSATKVEDAPVVVSPAKSGKKGKRQAEEEVKAVSAKKQKLEEVKQKKEAELKKVKKEESSSEEDSSDESEDEKPVAKAAAPAKNTPAKNGSVKKAAKPVSSSDESDEDDSSEEEEASSKKPTKVEAAKATKVVPKKEESSDDSDSEDDSSEDEKPAAKAVPSKNVSAPAKKEASSSDDDSSDEDSDEDEAPKPKAAAAAANNGSVPAKKPAESSESDSSDSDSDDGKNKKKPAATVPKTESSDDDSSEESSDEEDTKPAPPAKSAAVAKKKEEDSSDSDEDSSSDEDNKTKNVSNGNKKPVSAAKKEVSESESDSSDDVDKMEVDNDDSSDSSDDSEEESEEEPAKTPQKKVKDVEMVDASKSAKKAPTTPATPNENSGSKTLFCGNLAFSVQRADIENFFQDCGEVVDVRLATDEDGRFKGFGHIEFATAEAARSALELNGQELLGRDVRLDLARERGAYTPNNNSNYSAQSGGTGQSQTIFVRGFDKSLGEDELRSKLEQHFGSCGEVTRVSIPKDFDSGYVKGFAYMDFKDLDSKNKALELHESELEGYTLSVDEAKPRDSQGSGGGRSGGFGGRSGGRGGRFGGRDSGGRGRGRFGGRDSGGRGRGRFGGRDGGRGFNKPSFAASGKKTTFGDD 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02614 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 387 463 IPR000504 GO:0003723
Trre8g02614 644 SUPERFAMILY RNA-binding domain, RBD 483 599 IPR035979 GO:0003676
Trre8g02614 644 Gene3D - 471 601 IPR012677 -
Trre8g02614 644 MobiDBLite consensus disorder prediction 559 644 - -
Trre8g02614 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 486 567 IPR000504 GO:0003723
Trre8g02614 644 SUPERFAMILY RNA-binding domain, RBD 377 484 IPR035979 GO:0003676
Trre8g02614 644 Coils Coil 29 70 - -
Trre8g02614 644 SMART rrm1_1 388 459 IPR000504 GO:0003723
Trre8g02614 644 SMART rrm1_1 487 563 IPR000504 GO:0003723
Trre8g02614 644 Gene3D - 308 470 IPR012677 -
Trre8g02614 644 MobiDBLite consensus disorder prediction 120 146 - -
Trre8g02614 644 MobiDBLite consensus disorder prediction 595 622 - -
Trre8g02614 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 389 456 IPR000504 GO:0003723
Trre8g02614 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 488 560 IPR000504 GO:0003723
Trre8g02614 644 MobiDBLite consensus disorder prediction 219 250 - -
Trre8g02614 644 FunFam Nucleolin 2 362 471 - -
Trre8g02614 644 MobiDBLite consensus disorder prediction 26 68 - -
Trre8g02614 644 CDD RRM2_NUCLs 487 565 IPR034350 -
Trre8g02614 644 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 132 528 - -
Trre8g02614 644 MobiDBLite consensus disorder prediction 319 348 - -
Trre8g02614 644 MobiDBLite consensus disorder prediction 1 387 - -
Trre8g02614 644 CDD RRM1_NUCLs 388 464 IPR034349 -
Trre8g02614 644 MobiDBLite consensus disorder prediction 372 387 - -
Trre8g02614 644 MobiDBLite consensus disorder prediction 349 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02614 Trre-Chr8 21425358 21429688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02614 385 561 Eukaryotic Initiation Factors Gene Family AT4G34110 27.374 2.79e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02614 K11294 - gmx:100786132 414.075