LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g02609	ATGGATTCCGACGACGATGACTATTCCTACATTTCAGATGAAGACGAGAATCACTTCTCTGTTTTAACTGAATCTGACATTAAGCGTCTTCAAAACGAAGACATCGATCACATTTCATCAATTCTCTCATTATCCAAACCCACTTCATCTCTTTTACTCTCTCACTTTAATTGGAACATTACTCAAGTTATGGAATCATGGTTTGATAATCCACAAAAAGTTCAAAAAATCACTGGCTTATCATCAAATCAACCCCAATTACAAGAATTAGGGTTTCCAATTTCATCACAAATTCGCACATGTGATATTTGTTTTGATACCTTTTCTAAAGATGATATCAAGTCATCATGGTGTGGTCATCCATTTTGTATTGATTGTTGGAATCAATATATCGATACAAACATCGATGATCGTAATTGCTTTGATTTAAGATGTCCTCAACCTTCTTGCAATGCTGTTGTTGATGAAGACATGATTCGTCAATTAGCAAGTGAGTCGAGAAAAATTAAATATGATCGATTTTTGATTCGGTCTTATGTGGAAACTAACAAAAATCGGAAATTGAAGTGGTGTCCTGCTCCGGATTGTGGTTATGCTATAGATTTTGATTTACCTGATTCTAGTTCTAGGTTAAATTATGATGTTACATGTCTTTGTTATCATAGCTTTTGTTGGAATTGCGGTGAAGAAGCTCATGCACCGGCGAATTGTGAAACTGTTGCTAAATGGATGGGAAATATTAGTTCATATATTGTGATTTCAACTAATAGTTGGATTATTACTAACACAAAACCATGTCCTAATTGCAAGATACCTATTCAGAAAAACCAAGGGTGCAGACACATGAATTGCAAATTATGTAAGTTTAACTTTTGTTGGTCATGTCTCTGTGATTTCCGTACATGTAGTCGAGAACGTTGCAAAACATTAAATGTTGAACAAGTTCAGAAATTACAACAAGAGGTATATGGTGAGGAAATGCAAATAAACAATGCAAAAAATTTGGAAAGGTACACTTACTACTATGATAGTTGGGCTGAAAATGAAATTTCAAGAAAAAAGGCGCTTTCGAAATTGATTGAGATTAGTAGTAATGTGTATATAAAGAGTTTGAGTATATCAAAGGAAAAGCATGAAGGTTATTTTCATTTCATGAAGGATGTATGGAATCAGATTGTTGAAGGTAGAAGAATTCTCAAATGGGCTAATGTATATGGATACAATCTTCCTGAGAATGAAAAAGCTAAGACTGAGTTTTTTGAACACATCAAAGGTATGTCACAGGTTGCTTTGGATAAGCTTCATCATAGTGCAGAAACTGAATTAGGAAAAGTTCTAAATGATGGGTCAGAAGAAGAATTTCGTGATTTACGGTTGAATTTAATCAATCTGACTAGTGTGACTAAAAAGTATTTTATGAATTTGGTTAAGGATTTAGAGAATGGTTTAGATGTTGTGTCTGTGAAAAACTATACTGGGGGGAAAAGGAAAAGGGTTTCAAGTGAAATTGGCGACAACTCGAATCAAAATCGGAATATTAGAAGGCAAAGCGGAATCCAAGTATGA	1566	0.341	MDSDDDDYSYISDEDENHFSVLTESDIKRLQNEDIDHISSILSLSKPTSSLLLSHFNWNITQVMESWFDNPQKVQKITGLSSNQPQLQELGFPISSQIRTCDICFDTFSKDDIKSSWCGHPFCIDCWNQYIDTNIDDRNCFDLRCPQPSCNAVVDEDMIRQLASESRKIKYDRFLIRSYVETNKNRKLKWCPAPDCGYAIDFDLPDSSSRLNYDVTCLCYHSFCWNCGEEAHAPANCETVAKWMGNISSYIVISTNSWIITNTKPCPNCKIPIQKNQGCRHMNCKLCKFNFCWSCLCDFRTCSRERCKTLNVEQVQKLQQEVYGEEMQINNAKNLERYTYYYDSWAENEISRKKALSKLIEISSNVYIKSLSISKEKHEGYFHFMKDVWNQIVEGRRILKWANVYGYNLPENEKAKTEFFEHIKGMSQVALDKLHHSAETELGKVLNDGSEEEFRDLRLNLINLTSVTKKYFMNLVKDLENGLDVVSVKNYTGGKRKRVSSEIGDNSNQNRNIRRQSGIQV	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g02609	521	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	95	184	IPR013083	-
	Trre8g02609	521	MobiDBLite	consensus disorder prediction	503	521	-	-
	Trre8g02609	521	Coils	Coil	315	335	-	-
	Trre8g02609	521	SUPERFAMILY	RING/U-box	171	243	-	-
	Trre8g02609	521	SUPERFAMILY	RING/U-box	96	181	-	-
	Trre8g02609	521	MobiDBLite	consensus disorder prediction	498	521	-	-
	Trre8g02609	521	ProSiteProfiles	Zinc finger RING-type profile.	101	146	IPR001841	-
	Trre8g02609	521	ProSiteProfiles	TRIAD supradomain profile.	97	313	IPR044066	-
	Trre8g02609	521	ProSiteProfiles	Zinc finger CCHC-type profile.	224	237	IPR001878	GO:0003676\|GO:0008270
	Trre8g02609	521	Pfam	IBR domain, a half RING-finger domain	170	237	IPR002867	GO:0008270
	Trre8g02609	521	CDD	BRcat_RBR_ANKIB1	176	243	-	-
	Trre8g02609	521	SMART	ibrneu5	169	237	IPR002867	GO:0008270
	Trre8g02609	521	SMART	ibrneu5	248	307	IPR002867	GO:0008270
	Trre8g02609	521	FunFam	RBR-type E3 ubiquitin transferase	95	183	-	-
	Trre8g02609	521	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	34	401	IPR031127	GO:0004842\|GO:0016567
	Trre8g02609	521	Gene3D	-	233	485	-	-
	Trre8g02609	521	SUPERFAMILY	RING/U-box	258	306	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g02609	Trre-Chr8	21394154	21395719	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g02609	16	497	ARIADNE family	AT1G65430	43.662	1.33e-133	397

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g02609	K11968		-	psat:127103397	534.258