Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02588 ATGGGTTTGTGTTCAATTATTATAAATTTGAATGTTGTTATTCTTCTTATTCTAGTTCTATGTTGGAACAAACAAGTTTATGGTGTGACAGAGCAAGAAGAGGACAGAGTGTATGAATTACCTGGACAGCCTTTGGTGAATTTCAAACAATATTCTGGTTATATTACTGTCAATGAAAGTCATGGAAGAGCACTGTTTTATTGGTTCTTTGAATCCTATGATCAACCTCAACAAAAACCTCTTCTTCTTTGGCTCAATGGAGGCCCTGGATGTTCTTCAATTGGTTATGGAGAAGCAGAGGAACTTGGACCCTTCTTTCCCCAAAATAGCACCCAACCTAAGCTCAAGTTGAATCCTTATTCTTGGAATAAAGCTGCAAATCTTTTGTTTCTTGAATCCCCTGTTGGAGTGGGATTTTCCTACACCAATACCACCAGTGATATACATGAGCTTGGTGACACCATTACTGCTAAGGATTCACACACATTTCTCATCAATTGGTTTAAAAGATTTCCTCAATTCAAATCACATGATTTCTATATTGCTGGTGAAAGCTATGCAGGACACTATGTTCCACAACTTTCCGAGCTTATTTTGGATAATAATCACAATTCTTCTAAGGAAGATTACATTAACTTCAAAGGGATCATGATTGGTAATGCACTATTGGATGATGAAACAGATCAAAAGGGTATGATAGAATATGCATGGGATCATGCTGTTATATCTGATGGTTTATACCATAACATTACAACTGTATGCAACTTCAGCTATCCAATTCAAAATCAAACAGATGATTGCAATACTGAACTTAACAAATACTTTGATGTGTATAAGCTTATAGACATGTATAGTTTGTACACTCCCATGTGTTTCAGCAACATCAGCAACACAAGAAGAGAATCCCCCGTCATCAAAACCGCGAACCCTCGTTCCCTTTCCAAATTTGACGGACGGCGTAGAAATCTAGCAGGATACGATCCATGTGCATCGGATTATACTGCAGCATATCTAAATAGGCCAGAAGTTCAAAAGGCACTGCATGCTAATGTCACCAATATTCCATATCCATGGAGTCACTGCAATAATAATATATCATTTTGGAATGACGCACCGGTGTCCATGCTTCCTGTCCTCGAGAAACTTATTGCCGGCGGTCTCCGCATATGGGTTTACAGTGGAGATACAGATGGAAGAATTCCTGTAACTGCAACAAGATACACACTAAATAAATTGGGACTCCCTATAGTTCAAGATTGGACTCCTTGGTATACGAGTCGTCAGGTGGGAGGATGGAACATTGTATACGATGGTCTAACATATGTGACAATAAGAGGAGCTGGTCACCAAGTTCCTACTTTTACTCCCAAACAAGCACTTCAGCTAGTTCGACACTTCTTAGTCAATAAGAAATTACCACAACATCCTATTTAA 1434 0.3863 MGLCSIIINLNVVILLILVLCWNKQVYGVTEQEEDRVYELPGQPLVNFKQYSGYITVNESHGRALFYWFFESYDQPQQKPLLLWLNGGPGCSSIGYGEAEELGPFFPQNSTQPKLKLNPYSWNKAANLLFLESPVGVGFSYTNTTSDIHELGDTITAKDSHTFLINWFKRFPQFKSHDFYIAGESYAGHYVPQLSELILDNNHNSSKEDYINFKGIMIGNALLDDETDQKGMIEYAWDHAVISDGLYHNITTVCNFSYPIQNQTDDCNTELNKYFDVYKLIDMYSLYTPMCFSNISNTRRESPVIKTANPRSLSKFDGRRRNLAGYDPCASDYTAAYLNRPEVQKALHANVTNIPYPWSHCNNNISFWNDAPVSMLPVLEKLIAGGLRIWVYSGDTDGRIPVTATRYTLNKLGLPIVQDWTPWYTSRQVGGWNIVYDGLTYVTIRGAGHQVPTFTPKQALQLVRHFLVNKKLPQHPI 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02588 477 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
Trre8g02588 477 Gene3D - 329 365 - -
Trre8g02588 477 FunFam Carboxypeptidase 31 293 - -
Trre8g02588 477 FunFam Carboxypeptidase 375 469 - -
Trre8g02588 477 FunFam Carboxypeptidase 325 472 - -
Trre8g02588 477 Pfam Serine carboxypeptidase 42 468 IPR001563 GO:0004185|GO:0006508
Trre8g02588 477 SUPERFAMILY alpha/beta-Hydrolases 33 474 IPR029058 -
Trre8g02588 477 Gene3D - 375 468 - -
Trre8g02588 477 ProSitePatterns Serine carboxypeptidases, histidine active site. 439 456 IPR033124 GO:0004185
Trre8g02588 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Trre8g02588 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185|GO:0006508
Trre8g02588 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Trre8g02588 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Trre8g02588 477 Gene3D alpha/beta hydrolase 31 293 IPR029058 -
Trre8g02588 477 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 456 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02588 Trre-Chr8 21238930 21246879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02588 337 472 Calmodulin-binding Proteins AT2G22960 30.657 3.68e-16 74.7