Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02567 ATGGATTGTACACCTGCTAGAAAGACGCAGAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGATAAAGCAACCATTCTAGGTGATACAGTTCAATTGCTGAAGGACCTTACATCTCAAGTTAGTAAACTAAAAGATGAATATACTATGCTAAATGAAGAATCTCGTGAGTTGACCCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAATTTGAATAACCAGTATCAGCTTCAACTAAGGACTATGTATCCATGGCCTGCAATGGATCATTCCGTTATGATGGCTCCACCAACATATCCGTATCCAGTCCCAATGCCAGTACCTCCCGGTTCAATTCCCATGCAGCCGTACCCCTACTATGCTAATCAACATCCTGCAGTCATCCCTAACCCGTGTTCAACATATGTTCCTTTTTTAGCCCCGAATACAATTGTTGAACAACAATCCACTCAGTACGTATCCCCGCCTCTTCATCCAGGTAGCCGGTCGCACGTATCAGGAAAACAAGACTCCAAAAACAAATCATCGAGGGAGAGCAAGGCTCAAAGAAATGAGGATTCGAATGATGTAGCCACGGACCTTGAGTTGAAGACTCCCGGGTCTTCTGCAGAACAGGATTTATCATCCACACAAAAAAAATCTAGTAAGTCGTCAAGGAAGGAAAACAGTTTCACAGAAGGTAGTTCGTTAGGCAAGTGTTCTTCATCTCACAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGGGGCAGAAAGTCTACTGAATGA 849 0.4276 MDCTPARKTQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILGDTVQLLKDLTSQVSKLKDEYTMLNEESRELTQEKNDLREEKASLKSDIENLNNQYQLQLRTMYPWPAMDHSVMMAPPTYPYPVPMPVPPGSIPMQPYPYYANQHPAVIPNPCSTYVPFLAPNTIVEQQSTQYVSPPLHPGSRSHVSGKQDSKNKSSRESKAQRNEDSNDVATDLELKTPGSSAEQDLSSTQKKSSKSSRKENSFTEGSSLGKCSSSHSVQDSSSSSVVGGRKSTE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02567 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Trre8g02567 282 Gene3D - 6 89 IPR036638 GO:0046983
Trre8g02567 282 MobiDBLite consensus disorder prediction 221 239 - -
Trre8g02567 282 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Trre8g02567 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Trre8g02567 282 CDD bHLH_AtILR3_like 11 85 - -
Trre8g02567 282 MobiDBLite consensus disorder prediction 248 282 - -
Trre8g02567 282 MobiDBLite consensus disorder prediction 177 282 - -
Trre8g02567 282 MobiDBLite consensus disorder prediction 192 219 - -
Trre8g02567 282 SMART finulus 12 62 IPR011598 GO:0046983
Trre8g02567 282 Coils Coil 53 108 - -
Trre8g02567 282 PANTHER TRANSCRIPTION FACTOR BHLH121 2 280 IPR044579 GO:0003700|GO:0006879
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02567 Trre-Chr8 21100861 21102616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02567 1 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 62.500 7.17e-98 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g02567 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02567 - - cam:101491902 464.536