Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02559 ATGTCTATTCAGAGTAACGAAAAAATTGTTTTGGGTCCTAAAAATCCTTTAAAAGGGAAGTTTCAGGCTTCTATTGGAGCAGATGAGTTTTTCAGCCTTGAGACATGGAAAGCAGCTTTGACAGAATTAGTGGCAACTGCCTCTCTAATGGTTACCTTGTCTACTTCCATTATTGCATGTTTGGACTCACATGAAGTTGATCCTAAGCTTATAATTCCCTTTGCAGTTTTCATCAATGCTTTCTTGTTCTTAATTGCCACAGTTCCTCTATCTGGTGGCCACATGAGCCCTGTTTTCACATGCATAGCTGCACTAAAAGGTGTTGTAACACTTTATCGTGCCCTACTTTATGTGATAGCACAATGCATTGGCTCAATAATTGGTTTCTATATACTAAAGTGTGTCATGGATCCAAGATTAGTAAATACATATTCCTTAGGAGGTTGTGCTATTGGTGGTAAAGGACTCAATTCTAGTATTAATCAATATGAAGCTTTGTTATTGGAAATCTCTTGCACATTTTTGGTACTTTTTTTGGGTGTCACATTGGCTTTTGACAAAAAAAGGTCAAAGAATATGGGTTTACCAATGGTATGTTTAGTGATAGCTGGGGCCATGGCATTGGCTGTATTTGTGTCGATAACAGTAACGGGCCGGGCCGGTTACGCTGGTGTTGGGCTTAACCCAGCAAGATGCTTAGGTGCGGCGTTGCTTCATGGGGATTCGTTATGGAATGGACATTGGGTTTTTTGGGTTGGGTCTATCATAGCTTGTTTAATCTATTATAGTGTCTCTATCAACCTGCCAAATGAGGGTTCAACTTCGGAGGATGGAGAATATGTTGTCTTAAAGTTGGCTCGAGGTTCTCTGGATACTATTCGTAAGGGTGACATTTCAAATGATATCACAATAGAACGAAGTGGTTTTCAAGAATATTTATCGTGTACTACACAAATATGA 960 0.3937 MSIQSNEKIVLGPKNPLKGKFQASIGADEFFSLETWKAALTELVATASLMVTLSTSIIACLDSHEVDPKLIIPFAVFINAFLFLIATVPLSGGHMSPVFTCIAALKGVVTLYRALLYVIAQCIGSIIGFYILKCVMDPRLVNTYSLGGCAIGGKGLNSSINQYEALLLEISCTFLVLFLGVTLAFDKKRSKNMGLPMVCLVIAGAMALAVFVSITVTGRAGYAGVGLNPARCLGAALLHGDSLWNGHWVFWVGSIIACLIYYSVSINLPNEGSTSEDGEYVVLKLARGSLDTIRKGDISNDITIERSGFQEYLSCTTQI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02559 319 Pfam Major intrinsic protein 32 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g02559 319 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g02559 319 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g02559 319 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g02559 319 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g02559 319 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g02559 319 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g02559 319 Gene3D Glycerol uptake facilitator protein. 23 270 IPR023271 -
Trre8g02559 319 SUPERFAMILY Aquaporin-like 33 260 IPR023271 -
Trre8g02559 319 PANTHER AQUAPORIN-LIKE 14 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02559 Trre-Chr8 21059574 21061059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02559 8 260 Major Intrinsic Protein MIP AT3G54820 29.670 5.41e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02559 K09866 - gmx:100804160 438.343