Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02554 ATGAAAACTTTCCTTTTGCTGAAGAGAAGAGAAATTCGTAGAACACAAAACCGCTTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACAATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAGGACAAAGAAGGCATTCCACCAGACCAACAGAGGCTTATCTTTGCTGGAAAACAGCTGGATGATGGTCGGACTTTAGCTGATTACAACATTCAGAAAGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGGGGTATGCAGATTTTTGTTAAGACCCTCACTGGAAAGACTATCACCCTTGAAGTGGAGAGTTCTGACACCATAGACAATGTCAAGGCTAAGATACAAGATAAAGAAGGTATTCCCCCAGATCAGCAGAGGTTGATTTTTGCGGGAAAGCAGCTTGAAGATGGCAGAACCCTGGCTGATTATAACATCCAGAAAGAGTCAACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGTATGCAGATTTTCGTGAAAACTCTTACTGGTAAGACAATAACTTTGGAAGTTGAGAGCTCAGACACGATTGATAATGTGAAGGCCAAGATACAGGACAAGGAGGGCATTCCCCCAGATCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCCGAACCTTGGCCGATTATAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTCTGAGGAGAGGTATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTAGAAAGTTCAGATACGATCGATAATGTGAAGGCAAAAATACAGGACAAGGAGGGAATCCCACCAGATCAACAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGCCTTCGTGGTGGATTTTAA 978 0.4458 MKTFLLLKRREIRRTQNRFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRRGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02554 325 ProSitePatterns Ubiquitin domain signature. 199 224 IPR019954 -
Trre8g02554 325 ProSiteProfiles Ubiquitin domain profile. 97 172 IPR000626 GO:0005515
Trre8g02554 325 ProSiteProfiles Ubiquitin domain profile. 21 96 IPR000626 GO:0005515
Trre8g02554 325 ProSiteProfiles Ubiquitin domain profile. 249 324 IPR000626 GO:0005515
Trre8g02554 325 FunFam Polyubiquitin 3 97 172 - -
Trre8g02554 325 SUPERFAMILY Ubiquitin-like 172 248 IPR029071 -
Trre8g02554 325 Pfam Ubiquitin family 23 94 IPR000626 GO:0005515
Trre8g02554 325 Pfam Ubiquitin family 99 170 IPR000626 GO:0005515
Trre8g02554 325 Pfam Ubiquitin family 251 322 IPR000626 GO:0005515
Trre8g02554 325 Pfam Ubiquitin family 175 246 IPR000626 GO:0005515
Trre8g02554 325 PRINTS Ubiquitin signature 128 148 IPR019956 -
Trre8g02554 325 PRINTS Ubiquitin signature 107 127 IPR019956 -
Trre8g02554 325 PRINTS Ubiquitin signature 149 170 IPR019956 -
Trre8g02554 325 SUPERFAMILY Ubiquitin-like 247 324 IPR029071 -
Trre8g02554 325 FunFam Polyubiquitin 3 21 96 - -
Trre8g02554 325 ProSitePatterns Ubiquitin domain signature. 47 72 IPR019954 -
Trre8g02554 325 CDD Ubl_ubiquitin 97 172 - -
Trre8g02554 325 ProSitePatterns Ubiquitin domain signature. 275 300 IPR019954 -
Trre8g02554 325 ProSiteProfiles Ubiquitin domain profile. 173 248 IPR000626 GO:0005515
Trre8g02554 325 SUPERFAMILY Ubiquitin-like 96 172 IPR029071 -
Trre8g02554 325 CDD Ubl_ubiquitin 249 324 - -
Trre8g02554 325 FunFam Polyubiquitin 3 173 248 - -
Trre8g02554 325 ProSitePatterns Ubiquitin domain signature. 123 148 IPR019954 -
Trre8g02554 325 FunFam Polyubiquitin 3 249 324 - -
Trre8g02554 325 SUPERFAMILY Ubiquitin-like 20 96 IPR029071 -
Trre8g02554 325 Gene3D - 173 248 - -
Trre8g02554 325 Gene3D - 97 172 - -
Trre8g02554 325 Gene3D - 13 96 - -
Trre8g02554 325 Gene3D - 249 325 - -
Trre8g02554 325 CDD Ubl_ubiquitin 21 96 - -
Trre8g02554 325 SMART ubq_7 21 92 IPR000626 GO:0005515
Trre8g02554 325 SMART ubq_7 173 244 IPR000626 GO:0005515
Trre8g02554 325 SMART ubq_7 249 320 IPR000626 GO:0005515
Trre8g02554 325 SMART ubq_7 97 168 IPR000626 GO:0005515
Trre8g02554 325 CDD Ubl_ubiquitin 173 248 - -
Trre8g02554 325 PANTHER UBIQUITIN 97 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02554 Trre-Chr8 21022739 21024505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02554 21 97 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 8.33e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02554 - K08770 han:110936586 590.112