Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02546 ATGGAAGCTGTGTTCCTTACCAAACCAATTTCTCACTTCAAACCCAAACACCATTCTCTAACTCCCAAACATCATCATCATCATTCATTAATCTCCCACCACCACCATCAATCTCTCCCCATCCGCCACAAATCCACCAACTTCCCCACCGTTGTCACCACCGCACTTCAAAACCAGCAACAAACAACATCACCCAAAGACATCGAAGATGAATCCTACGGAGAAGTCAAAAAAATCATTGGAAGCAAAGCTCTCGAAGATTCCACCGGAATGGAATATCTCATCGAATGGAAAGACGGTCATGAACCCTCCTGGGTACCGGCGGACTTCATAGCAAAAGACGTCGTCTCCGAATACGAAACTCCATGGTGGACCGCCGCAAGAAAATCCGACGAAACCGCACTCAAAACAATCCTCGAAGCCGACGACAACCGCGACGTGAACGCCGTAGACTCCGACGGAAGAACCGCACTACTCTTCGTAGCAGGACTCGGCTCAGAGCCATGCGTTAAACTCTTAGCAGAAGCCGGCGCGAATCTCGATCATCAAGACAACAGAGGCGGCTTATCCGCACTTCACATGGCAGCCGGATACGTAAGACCCGGCGTGACGAAGCTTCTTTTAGAACTCGGCGCGGATCCAGAAATCACCGACGACCGTGGAAAAACGGCGTTGGATTTAGCTAGAGAGTTATTGAAAGCAACGCCAAAAGGGAATCCTATGCAATTCGGGAGAAGAATTGGGTTAGAAGGGGTTGTTAGAGTTTTGGAAGAAGCGGTGTTCGAGTACGTTGAAGTGGAAGAGATTATGGAAAAGAGAGGGAAGGGTGAGAATTTGGAGTATTTGGTTAAATGGAAAGATGAAAGTGCTAATGAGTGGGTGAAGGCGAGGTATGTGGCGGAGGATTTGGTGAAGGATTATGAAGCTGGTCTTGAGTATGCGGTGGCGGAAGCGGTGGTTGGTCGGAGAGTTGGAGATGATGGGAAATATGAGTGTTTGGTTAAATGGGTTGATTTGGAAGAGCCCACCTGGGAGCCTGAGGAGAATGTTGATTCTGAGCTTGTTAAGGTGTTTGAATTGAGTAATAATAAACAAGCCCAGCCCAAGCCCAGTATTGATAGTGGGCTTTCTACTGTTGCTTTTAGTCAGGATGGCCCAACTAGTGTTACCACATGA 1176 0.4804 MEAVFLTKPISHFKPKHHSLTPKHHHHHSLISHHHHQSLPIRHKSTNFPTVVTTALQNQQQTTSPKDIEDESYGEVKKIIGSKALEDSTGMEYLIEWKDGHEPSWVPADFIAKDVVSEYETPWWTAARKSDETALKTILEADDNRDVNAVDSDGRTALLFVAGLGSEPCVKLLAEAGANLDHQDNRGGLSALHMAAGYVRPGVTKLLLELGADPEITDDRGKTALDLARELLKATPKGNPMQFGRRIGLEGVVRVLEEAVFEYVEVEEIMEKRGKGENLEYLVKWKDESANEWVKARYVAEDLVKDYEAGLEYAVAEAVVGRRVGDDGKYECLVKWVDLEEPTWEPEENVDSELVKVFELSNNKQAQPKPSIDSGLSTVAFSQDGPTSVTT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02546 391 SUPERFAMILY Ankyrin repeat 118 230 IPR036770 -
Trre8g02546 391 ProSiteProfiles Ankyrin repeat region circular profile. 153 185 - -
Trre8g02546 391 ProSiteProfiles Chromo and chromo shadow domain profile. 264 293 IPR000953 -
Trre8g02546 391 PANTHER MYOTROPHIN 71 288 - -
Trre8g02546 391 ProSiteProfiles Ankyrin repeat profile. 187 219 IPR002110 GO:0005515
Trre8g02546 391 SUPERFAMILY Chromo domain-like 69 123 IPR016197 -
Trre8g02546 391 ProSiteProfiles Ankyrin repeat region circular profile. 187 219 - -
Trre8g02546 391 SUPERFAMILY Chromo domain-like 262 310 IPR016197 -
Trre8g02546 391 CDD CD3_cpSRP43_like 311 360 IPR030300 -
Trre8g02546 391 SUPERFAMILY Chromo domain-like 316 358 IPR016197 -
Trre8g02546 391 Pfam Chromo (CHRromatin Organisation MOdifier) domain 316 358 IPR023780 -
Trre8g02546 391 Gene3D - 310 360 - -
Trre8g02546 391 MobiDBLite consensus disorder prediction 365 391 - -
Trre8g02546 391 ProSiteProfiles Chromo and chromo shadow domain profile. 314 372 IPR000953 -
Trre8g02546 391 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Trre8g02546 391 Pfam Ankyrin repeats (many copies) 173 228 IPR002110 GO:0005515
Trre8g02546 391 Gene3D - 70 117 - -
Trre8g02546 391 Gene3D - 260 309 - -
Trre8g02546 391 Gene3D - 118 259 IPR036770 -
Trre8g02546 391 SMART ANK_2a 153 182 IPR002110 GO:0005515
Trre8g02546 391 SMART ANK_2a 187 216 IPR002110 GO:0005515
Trre8g02546 391 SMART ANK_2a 118 149 IPR002110 GO:0005515
Trre8g02546 391 SMART chromo_7 262 312 IPR000953 -
Trre8g02546 391 SMART chromo_7 72 124 IPR000953 -
Trre8g02546 391 SMART chromo_7 313 363 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02546 Trre-Chr8 20998874 21000049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02546 148 228 CAMTA Transcription Factor Family AT5G09410 41.379 2.11e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02546 K12271 - gmx:100818382 519.235