Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02545 ATGAGATGCAATGGGTGTCGCGTACTTCGCAAAGGTTGCAGCGAAGACTGCATCATCAAACCTTGCCTTGAGTGGATCAGTTCTTCCGAATCTCAAGGTAACGCCACCCTCTTCCTAGCCAAATTCTATGGTCGAACCGGCTTGTTCAACCTCCTTGCTAAGGCTTCCAGTCAAAATTCTCAAGCTGTGTTCAAATCATTGTTGTTCGAGGCTTCAGGTAGATTGTTGAATCCCACTCATGGGGCACTAGGTTTATTTTGGACAGGACAATGGAGCCGATGTGAAGCTGCAGTTGAAGCTGTGCTGACTGGATCCAATATTAATGATGTCACAACTGTTGAAGGACAAACATCATCCTTCGATGTTGAAAATCATGGTCTTCCAACAACCTACGATATATGTCGTGTGGCAAGAGTTTTCAAGCCTAAGCCGCGAGTTGGTTTGGTTAGCAAGGCTACACTTATGAGATTGGGTTTGGAGAGCGGTAGTGCAGAAATTGTGAAGGATAATTCGTCAATGATTGAAACAGAGCTGAATGGAGCTGCTGGAACTTAA 555 0.4505 MRCNGCRVLRKGCSEDCIIKPCLEWISSSESQGNATLFLAKFYGRTGLFNLLAKASSQNSQAVFKSLLFEASGRLLNPTHGALGLFWTGQWSRCEAAVEAVLTGSNINDVTTVEGQTSSFDVENHGLPTTYDICRVARVFKPKPRVGLVSKATLMRLGLESGSAEIVKDNSSMIETELNGAAGT 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02545 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 136 - -
Trre8g02545 184 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Trre8g02545 184 Pfam Lateral organ boundaries (LOB) domain 2 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02545 Trre-Chr8 20995407 20996494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02545 1 138 AS2 family AT1G68510 52.174 1.25e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre8g02545 LOB 8.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02545 - - mtr:25485496 226.483