Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02530 ATGAGTACTGAAGAAATTACACTTCCAGGATTCCGATTTCACCCCACAGAAGAAGAACTCCTTGATTTCTATCTTAAAAATATGGTTGTTGGTAAAAAACTTCGTTTTGATGTCATTGGTTTTCTCAACATCTATCACCATAATCCTTGGGACTTGCCAGGTTTGTCAAAAGTTGGGGAAAGAGAATGGTATTTCTTTGTGCCAAGGGACAAAAAACATGGTAGTGGAGGAAGGCCTAACCGCACAACTGAAAAAGGATTCTGGAAAGCAACCGGTTCGGACCGAAAAATTGTGACCTTATCTGATCCGAAGCGGATAATCGGGTTGAGGAAGACGTTGGTTTTCTACGAGGGAAGAGCTCCTCGTGGAAGCAAGACCGATTGGGTCATGAACGAGTACCGTTTACCTGACAATAGCCGCTTGCCTAAGGACATAGTGTTATGCAAGATATATAGAAAGGCAACTTCCTTGAAAGTGTTGGAACAAAGAGCAGCAGAAGAGGAAGAGATGAAACAAATGTTGGGTTCCCCTACATCCCCACCTTCCTCTACGGACACAATCTCTTTTAGCTACACACAACAACAAGACCAACACGTGTCCCTACCCATGTTGTTCCAACAAGTCATTCCTAAGAAAGAATCTGAACCAGAAATTGAAAATGAAATTGATGACATGGTTTCTTTTAGTCATGAAAAAATTGTGAAAGATAACAAAAAGACTTGTGGAACATCTTTGCAATTGCCCTTAGGGAAGGACAATGTACCCGAGTTACAGTTACCTATAGCTGCCGATTGGACCCAAGATACGTTTTGGGCTCAGCTTAATAGTCCTTGGCTACAAAATTGGACTGCTTATTCCAACATCCTTAATTTCTAA 876 0.4144 MSTEEITLPGFRFHPTEEELLDFYLKNMVVGKKLRFDVIGFLNIYHHNPWDLPGLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGSKTDWVMNEYRLPDNSRLPKDIVLCKIYRKATSLKVLEQRAAEEEEMKQMLGSPTSPPSSTDTISFSYTQQQDQHVSLPMLFQQVIPKKESEPEIENEIDDMVSFSHEKIVKDNKKTCGTSLQLPLGKDNVPELQLPIAADWTQDTFWAQLNSPWLQNWTAYSNILNF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02530 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 206 - -
Trre8g02530 291 SUPERFAMILY NAC domain 8 153 IPR036093 GO:0003677|GO:0006355
Trre8g02530 291 FunFam NAC domain-containing protein 67-like 16 157 - -
Trre8g02530 291 ProSiteProfiles NAC domain profile. 7 153 IPR003441 GO:0003677|GO:0006355
Trre8g02530 291 Gene3D NAC domain 16 157 IPR036093 GO:0003677|GO:0006355
Trre8g02530 291 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02530 Trre-Chr8 20834583 20836542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02530 4 288 NAC Transcription Factor Family AT2G17040 60.279 7.42e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g02530 NAM 5.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02530 - - adu:107477264 447.588