Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02529 ATGGCATCAATGGAAGACATCAACATGAGTACTGAAGAAATTACACTTCCAGGATTCCGATTTCACCCCACAGAAGAAGAACTCCTTGATTTCTATCTTAAAAATATGGTTGTTGGTAAAAAACTTCGTTTTGATGTCATTGGTTTTCTCAACATCTATCACCATAATCCTTGGGACTTGCCAGGTTTGTCAAAAGTTGGGGAAAGAGAATGGTATTTCTTTGTGCCAAGGGACAAAAAACATGGTAGTGGAGGAAGGCCTAACCGCACAACTGAAAAAGGATTCTGGAAAGCAACCGGTTCGGACCGAAAAATTGTGACCTTATCTGATCCGAAGCGGATAATCGGGTTGAGGAAGACGTTGGTTTTCTACGAGGGAAGAGCTCCTCGTGGAAGCAAGACCGATTGGGTCATGAACGAGTACCGTTTACCTGACAATAGCCGCTTGCCTAAGGACATAGTGTTATGCAAGATATATAGAAAGGCAACTTCCTTGAAAGTGTTGGAACAAAGAGCAGCAGAAGAGGAAGAGATGAAACAAATGTTGGGTTCCCCTACATCCCCACCTTCCTCTACGGACACAATCTCTTTTAGCTACACACAACAACAAGACCAACACGTGTCCCTACCCATGTTGTTCCAACAAGTCATTCCTAAGAAAGAATCTGAACCAGAAATTGAAAATGAAATTGATGACATGGTTTCTTTTAGTCATGAAAAAATTGTGAAAGATAACAAAAAGACTTGTGGAACATCTTTGCAATTGCCCTTAGGGAAGGACAATGTACCCGAGTTACAGTTACCTATAGCTGCCGATTGGACCCAAGATACGTTTTGGGCTCAGCTTAATAGTCCTTGGCTACAAAATTGGACTGCTTATTCCAACATCCTTAATTTCTAA 900 0.4144 MASMEDINMSTEEITLPGFRFHPTEEELLDFYLKNMVVGKKLRFDVIGFLNIYHHNPWDLPGLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGSKTDWVMNEYRLPDNSRLPKDIVLCKIYRKATSLKVLEQRAAEEEEMKQMLGSPTSPPSSTDTISFSYTQQQDQHVSLPMLFQQVIPKKESEPEIENEIDDMVSFSHEKIVKDNKKTCGTSLQLPLGKDNVPELQLPIAADWTQDTFWAQLNSPWLQNWTAYSNILNF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02529 299 Gene3D NAC domain 24 165 IPR036093 GO:0003677|GO:0006355
Trre8g02529 299 ProSiteProfiles NAC domain profile. 15 161 IPR003441 GO:0003677|GO:0006355
Trre8g02529 299 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Trre8g02529 299 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 214 - -
Trre8g02529 299 SUPERFAMILY NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Trre8g02529 299 FunFam NAC domain-containing protein 67-like 24 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02529 Trre-Chr8 20834583 20836566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02529 12 296 NAC Transcription Factor Family AT2G17040 60.279 6.05e-115 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g02529 NAM 6.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02529 - - gmx:732555 458.759