Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02522 ATGCTTCAAAGCTTGGTCCCTCGTCCTCCTCTCACTTCCAAATCTAATAATAATAATAATATGAATGCCAAACGCGCCGAACGTGAACACGACGACGCTGATGATTCCACCCTTCAGGAACAACCTTCTTTCAAAAGACCTAATTACTCCGGCGAACAAACGCTGGCGGAACCCGAACAACACGACGAAGAACAAGCCTTCGAACCTGAAAACGAAGGCGAATCAACAGGTTTGAAACTTCTAGGGCTTTTGCTTCAATGCGCTGAGTGTGTTGCTATGGATAATCTTGATTTCGCCAACGACCTGTTACCGGAGATTACCGAGCTTTCTTCACCGTTCGGAACTTCGCCGGAGCGCGTTGGAGCTTATTTTGCACAGGCGTTACAAGCGCGTGTGGTGAGTTCTTGTCTCGGTAGTTACTCGCCGTTAACTGCTAAATCGGTAACCCTAACTCAGTCGCAAAGAATCTTCAACGCGTTTCAATCCTATAACTCGGTTTCACCGTTGGTGAAATTCTCGCACTTCACCGCTAATCAAGCAATTTTTCAAGCTGTGGACGGTGAGGATCGTATCCACATCATCGACTTCGATATCATGCAAGGACTTCAATGGCCAGGATTGTTCCACATCCTCGCTTCACGATCCAAGAAAATCCGCTCCGTTAGAATCACCGGTTTTGGATCTTCTTCAGAGCTTCTAGAATCAACGGGAAGAAGACTCGCCGATTTCGCGAGTTCACTCGGTCTTCCGTTCGAGTTTCGTCCAATTGAAGGCAAAATCGGAAGCGTAACGGAACCGAGTCAACTCGGTGTTAGACCTAACGAAGCAATCGTTGTTCACTGGATGCATCATTGTTTATACGATATAACCGGAAGCGATTTAGGAACGTTGAGATTGCTGAGTCAGCTTCGGCCAAAACTAATCACCACCGTTGAACAGGATCTTAGCCACGCTGGTAGCTTCCTCGCCAGGTTTGTGGAAGCTTTGCATTATTACAGCGCGTTGTTCGACGCGCTTGGGGATGGATTGGGTGTGGATAGTGTTGAGAGGCATATGGTGGAGCAGCAACTGTTGGGGTGTGAAATTAGGAACATTATTGCCGTTGGTGGGCCCAAGAGGACTGGTGAGGTTAAAGTTGAGAGATGGGGGGATGAATTGAAACGGGTTGGGTTTCAACCCGTTTCGCTTCGGGGTAACCCGGCTGCACAAGCGACCGTCAGATTTGATGACTTATACCGATTGAATTCATTGTTTGATATTACGGTGCGACTGACGACCGAGGGAGAGGCAGCAACTGTTGATTAG 1305 0.4797 MLQSLVPRPPLTSKSNNNNNMNAKRAEREHDDADDSTLQEQPSFKRPNYSGEQTLAEPEQHDEEQAFEPENEGESTGLKLLGLLLQCAECVAMDNLDFANDLLPEITELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQAVDGEDRIHIIDFDIMQGLQWPGLFHILASRSKKIRSVRITGFGSSSELLESTGRRLADFASSLGLPFEFRPIEGKIGSVTEPSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLSQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGVDSVERHMVEQQLLGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFQPVSLRGNPAAQATVRFDDLYRLNSLFDITVRLTTEGEAATVD 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02522 434 MobiDBLite consensus disorder prediction 23 39 - -
Trre8g02522 434 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g02522 434 Pfam GRAS domain family 82 409 IPR005202 -
Trre8g02522 434 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 59 407 IPR005202 -
Trre8g02522 434 MobiDBLite consensus disorder prediction 40 55 - -
Trre8g02522 434 MobiDBLite consensus disorder prediction 1 73 - -
Trre8g02522 434 ProSiteProfiles GRAS family profile. 71 434 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02522 Trre-Chr8 20744243 20745798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02522 21 404 GRAS Transcription Factor Family AT5G41920 63.566 2.90e-165 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre8g02522 GRAS 6.4e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02522 - - gmx:100816249 662.529