Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02507 ATGGAATTCGTCGGAAAAACCGTTCGGAAAGAGGTGAACGGGGTTCCAATTCTCACCGGAACTGTCAAATCTTACGATTCTTCGTCGGGTTTGTTGGAGATCCTTTTCGAAGGCGGTCATTGTGAGAAGATGGAAGTTTCTGAGGTTGCTTCGCTGCTGGAAATTCAATCGGAGCTTTCTGAGGTCAAAGTTAAGGTCGGTCGGAAACCTAAAAAACGACGCCGTGTTGAGCAGAATGGTGAAACGACATCGAGTTCAGGTAATGTTAGTGATGATTTGGTGGCGGGTAGTGAATTTAGCGGGATTTTGAATGGTGATGATTCTAGTGGCGGGAATGATGGGGATGTTGTGGGTAATGTGAATGGGACTAGTGGGAGTGAAGAGAAACTAGGAAATGGAAATGGGTTTGGTTTAGGAGAGATTTTGAATTTGAATGAGAATGAGGGTGTTTCTGATAATAATGATAATAATAATAATAATGATAATGGAATTTGTGTTAAAGATGGTATTGATTTGAATGCTAGGCTTAATTTGAATGAGGATATTAATCTGAATGATGTGTGTGATTCCGATTTGCCGCCTTTTAATAACGCGGGTAGTGTGGAGAGAAGAGATTGTATTGATTTGAATTTGGATGTGAGTGTTGAGGAGGGTCTGAACTTGGATGTGAATTCGGGAGGGGAAATTTTGCGGCGGGAATTTGATTTGAATGTGGGGGTGTGTGAAGAGGTTAAGGAAGCTCAGGGTTGTGCTGATGGAAATGGATATTCTGAGGTCGATGGTGAGATGGGGCAGATTCGAGAAGAAGAGTCGGATGTTAAGCACACATATACGGAAGCTGATGGTGGTTGTGGTAATTTGAATTGTGCCTCGGATGCTATCAAATTGGAGGAACATCATGCTTCGGTCGAGAATATAGCTGAAGAAGGTATGGTCGAGGAAAAGGAAGGTCATGATGACAAAGAAAATGTGGCGGCTATCGACTCTCTTCGGGTTTCGGATGCTGTTTCTGTTATGGATTGTGATTATGTTTCTTCGGAAGCTGCTGTTGCCGTAGTTAATCAATACCAAGATGATCCAGGAAGTCCACGCAAACAAGGAATTAGGCAAAGGAAGAGAAGAAAAGTGTCAGATAATCTAAATTCCACCCCGGACACGGCTTTGAGGAGGAGTTCTCGCCGGGCATCAGCTAGAAAAGAGGTTTCAAGTGCAGTATCAGGGAAGGGGACTGATGATCCTTTGTCATCCTTGGAAACAAGTGTAACAGAAGAAAAACCTTTGATGCCTGGAAATGAGAAATATGAACAGTGCAATGTTCCTATTCCGAAGCTGCAATTACCCCCTTCTTCTCAAAATTTGAATTTAGATGGCATTCCTGTCATTGAATTTTTTTCTGTTTATGCTTGTTTAAGATCATTCAGTACCTTGTTATTTTTGAGTCCATTTGAGTTGGAAGATCTTGTAGCTGCACTTAAATCTGAAATCCCTAGTGTATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGAAAGCATTTGGAATTCCTTTCCAGTGAGGGTAGCCAATCTGCATCCATTTGCCTGAGGAATCTTAATTGGGATTTCTTGGACCTTGTCACTTGGCCCATGTTCATGGCCGAGTACCTTCTGATTCACAGTTCACAGTTTAAAACTAGTTTTGATGCTAGCCACTCAATGTTCAGAACTAACTACTACAAACAACCTGTCACTTTGAAGCTTGAGATTCTTCAGTACCTGTGTGATGATATGATTGAAGCAGACACCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACAGAGACTGGCATGGGTTTTGATCAGAATATTTATTTCGACACTTGCAAGAAAAAAAGAGCTGTAACAGATCTTTCTGGTGGATCTTGCTTGACTGAGGAGATTGCGGATGACACAACTGACTTGAACAGTGATGAATGTTGCCTTTGCAAGATGGATGGAAATTTAATATGTTGCGATGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTCGGGCTTGCAAGTGACAATCTGCCTGAAGGTGACTGGTATTGTCCCGAGTGTGCTATTGGCACACACCGGGCTTCGAGGAAATCACGAAGGTCACTCCGTGGAGCAGACTTGTTGGGGACGGATCCTCACGGCTGTCTTTATTTTGATAGCTGTGGTTACCTGTTAGTTTCAAACTCATCAGATGCGGGATCCTTGTTCAATTACTACCATAGAAATGATATACATGTTGTAATTGAAGTTCTAAAGTCTATGGATACTTCATATCGAGACTTATTACTGGCTATTTATAAGCATTGGGATATTCCGGCTGCCTTAAATGCAGGGGCTAGTAATTTGGCAGTCTTTAATCAAAGTTCCTGCAAGAGCATGCAAATGACAGCTGAATATGATGCTATGCCTACATCTGTAGCAGCTTTTACTTCTTCAGAAGCATTTATTGACAAGAATCTGGTTGATGATCAGAAAAAGTTGGAGAAAAATTCAACTATTGACTGTTGTAGTCATGATGGCCAAGAGTTTCCAAAAGTTGGGAACCAATTAGACTCAACAATAGAAAGTCCTTGTATTGCCTCAGAAGGATCAGCTGATACCGCACAAGTTAGCACTACCCCCTATACAGGCAATAAGGATTCATCACAAGCACCGTGTGGGACCGACTACATAAACTATTATAGCTTTGCCAGGGTGGCCTCATTAGTTGCACAGGAGTTGTTGATATGCAAGTCACAAGAAAAGATCAATAAAAATATTGTAATGACTGAAGAAGAAATAATTTCAGACCAAGCAAAGTCCATCATGAAGAAGTCCACCGACTTTTGTTGGCCAAGCATTCAAAACCTGAACGCAGCTGCCCAAAAGGAAAAATGTGGGTGGTGCTTTTCTTGCAAGGTTGCAAATGATGACAGAGATTGCTTGTACGTTTCTATGGTGAAACCTCTTTATGAAGTGTCTAAAAGTGCTTCAGCTGGGCTTCATCCCATGAATATCCAGAATGGACATCTTAGAGAGATAATATGTAATATTTTCTCTCTTGAGGCTCGATTGCGTGGTCTTTTGTTGGGTCCATGGTTGAATCTGCATCAAACAGATCATTGGCATAATAATCTTTTGAAGTCATCTGACCTTCTTCCAGTTAAACGATTATTGCTTCTTTTGGAGTCCAATTTGAGTGATCGCGCACTTTCAGCTGATTGGTTAAAGCATGTGGATTCTGTAGTTACTATGGGATCTGCTTCCCATATTGTGGTCAGTTCATCACGCGCATCCTCAAGGCAGGGCATTGGAAGGAAAAGAGCCAGGCAATCAGATATTGAATCCAGTTCATCTTCAAAGACTACTGGTGGTTTGGCAATGTATTGGTGGAGAGGTGGTAGGCTTTCCCGAAAGTTGTTTAATTGGAAGGTCCTGCCTCGCTCCTTTGTTACCAAGGCTGCTAGACAAGCTGGGTTTACAAAGATACCAGGTATTTTATATCCTGAAAATTCAGACTTTGCAAAGAGAAGCAGATGTGTTGCCTGGCGAGCTGCTGTTGAGATGTCGACAAGTGTTGAACAGCTGGCTTTACAGGTTAGAGAACTCTATTCAAACATAAGGTGGCATGATATTGAGAATAACCATCCTCTATATGTATTGGACAAGGAATCAAAAAAATCAGTCAGGCTATTCAAAAAAGCAATTGTACGCAGGAAGTGCATGGATGGACAATCTGCGAAATACCTTCTTGATTTTGGGAAGAGAAGGACTGTTCCAGATATTATTATTAAACATGGTTCTTTGTTGGAGCAACCCTCAAGTGAGAGGAAAAAATATTGGCTGAACGAGTCTTATGTTCCTTTGCATCTTTTAAAGAATTTTGAGGAAAAAAGAATCGTCCGCCAGTCTAATGATAAGAAAAATGGAAAAGTTCTTGAGATTGATATCGTAAAGAGGGATCCTCAACAAAGGGGTTTTTCATATTTGTTTGCCAGAATGGAAAGATCTGATTGTCATCAGTGTGGGCATTGCAAAAAAGACGTTCCAATAAGGGAAGCTGTGAGTTGCCTTCATTGCAAAGAATATTTCCACAAGTGGCATGTCAGGAAATCTGGTGGCACAAGAGCTACGGAATGCACATATTCATGTCACAGGTGCCAGGGTGGGTTGCATGTAAAGGCTAATACTAATAGAAAGAAAGTTGGCTCAAAACGGCAGAAGATTCAATCACCGAATTGTAAAATTACTCCTTTGGTTTGTAAATCAGTGAACCTTAAAGGCAATAAAAAGGCAGCAAGCAAGGTGCGGCAGGTGGTATCTCGAAACAATAAGAAGACCCCATCAATTGTACCTCTTCGTCGTTCTACTAGGAAAGCCAAATCCTTGTATTTGCGCAGTCAAATAATTGCAGGACGTAAAAAAGGAACACAAGGTAAAAAGAATGTAGGGCGTAAAAAAGGAAAGCAAAGTAAATCCAAGAAGGTGACATCTCAAAGGCCCAAGGAAACTACTAGTCAACCTAAGAAGTTTCCCGTTGCTACGTCACATAAGAAAAGAATACAACCTTCTAACAGTTACTGGCTTAATGGTCTTCAGTTTTCTAGAAAGCCAAATGATGACCGAGTAATGCTTTTTAAAGAGAAAAAGCATATTATCTCAGATGTTCTTACTGGTTCCTTTGATTGTCCTAAATGCCGCCTTTGTCGTGATGGATCCACTTCAAATTATATTGCTTGTGAAATCTGTGGAGATTGGTTTCATGGGGATGCTTTTGGTCTCACTGTAGAGAATGCCGAACAACTTATTGGGTTTAGGTGCCATGTTTGTCGTGGTAGGGATGCTCCGATCTGTCCCCATGTGAAGATTAATGCATTGTCTCACACTGAACCCAATGCTGCAATTGAGTGTGCAGAGGAATGA 4929 0.4129 MEFVGKTVRKEVNGVPILTGTVKSYDSSSGLLEILFEGGHCEKMEVSEVASLLEIQSELSEVKVKVGRKPKKRRRVEQNGETTSSSGNVSDDLVAGSEFSGILNGDDSSGGNDGDVVGNVNGTSGSEEKLGNGNGFGLGEILNLNENEGVSDNNDNNNNNDNGICVKDGIDLNARLNLNEDINLNDVCDSDLPPFNNAGSVERRDCIDLNLDVSVEEGLNLDVNSGGEILRREFDLNVGVCEEVKEAQGCADGNGYSEVDGEMGQIREEESDVKHTYTEADGGCGNLNCASDAIKLEEHHASVENIAEEGMVEEKEGHDDKENVAAIDSLRVSDAVSVMDCDYVSSEAAVAVVNQYQDDPGSPRKQGIRQRKRRKVSDNLNSTPDTALRRSSRRASARKEVSSAVSGKGTDDPLSSLETSVTEEKPLMPGNEKYEQCNVPIPKLQLPPSSQNLNLDGIPVIEFFSVYACLRSFSTLLFLSPFELEDLVAALKSEIPSVLFDSIHVSILQTLRKHLEFLSSEGSQSASICLRNLNWDFLDLVTWPMFMAEYLLIHSSQFKTSFDASHSMFRTNYYKQPVTLKLEILQYLCDDMIEADTIRSELNRRSLVTETGMGFDQNIYFDTCKKKRAVTDLSGGSCLTEEIADDTTDLNSDECCLCKMDGNLICCDGCPAAFHSRCVGLASDNLPEGDWYCPECAIGTHRASRKSRRSLRGADLLGTDPHGCLYFDSCGYLLVSNSSDAGSLFNYYHRNDIHVVIEVLKSMDTSYRDLLLAIYKHWDIPAALNAGASNLAVFNQSSCKSMQMTAEYDAMPTSVAAFTSSEAFIDKNLVDDQKKLEKNSTIDCCSHDGQEFPKVGNQLDSTIESPCIASEGSADTAQVSTTPYTGNKDSSQAPCGTDYINYYSFARVASLVAQELLICKSQEKINKNIVMTEEEIISDQAKSIMKKSTDFCWPSIQNLNAAAQKEKCGWCFSCKVANDDRDCLYVSMVKPLYEVSKSASAGLHPMNIQNGHLREIICNIFSLEARLRGLLLGPWLNLHQTDHWHNNLLKSSDLLPVKRLLLLLESNLSDRALSADWLKHVDSVVTMGSASHIVVSSSRASSRQGIGRKRARQSDIESSSSSKTTGGLAMYWWRGGRLSRKLFNWKVLPRSFVTKAARQAGFTKIPGILYPENSDFAKRSRCVAWRAAVEMSTSVEQLALQVRELYSNIRWHDIENNHPLYVLDKESKKSVRLFKKAIVRRKCMDGQSAKYLLDFGKRRTVPDIIIKHGSLLEQPSSERKKYWLNESYVPLHLLKNFEEKRIVRQSNDKKNGKVLEIDIVKRDPQQRGFSYLFARMERSDCHQCGHCKKDVPIREAVSCLHCKEYFHKWHVRKSGGTRATECTYSCHRCQGGLHVKANTNRKKVGSKRQKIQSPNCKITPLVCKSVNLKGNKKAASKVRQVVSRNNKKTPSIVPLRRSTRKAKSLYLRSQIIAGRKKGTQGKKNVGRKKGKQSKSKKVTSQRPKETTSQPKKFPVATSHKKRIQPSNSYWLNGLQFSRKPNDDRVMLFKEKKHIISDVLTGSFDCPKCRLCRDGSTSNYIACEICGDWFHGDAFGLTVENAEQLIGFRCHVCRGRDAPICPHVKINALSHTEPNAAIECAEE 1642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02507 1642 CDD PHD1_AIRE 654 696 - -
Trre8g02507 1642 MobiDBLite consensus disorder prediction 1502 1519 - -
Trre8g02507 1642 MobiDBLite consensus disorder prediction 114 130 - -
Trre8g02507 1642 ProSitePatterns Zinc finger PHD-type signature. 655 696 IPR019786 -
Trre8g02507 1642 ProSiteProfiles Zinc finger PHD-type profile. 652 699 IPR019787 -
Trre8g02507 1642 SMART testlast3 457 517 IPR018501 -
Trre8g02507 1642 MobiDBLite consensus disorder prediction 355 432 - -
Trre8g02507 1642 MobiDBLite consensus disorder prediction 408 422 - -
Trre8g02507 1642 ProSiteProfiles DDT domain profile. 457 517 IPR018501 -
Trre8g02507 1642 MobiDBLite consensus disorder prediction 1480 1497 - -
Trre8g02507 1642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 717 IPR013083 -
Trre8g02507 1642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1561 1619 IPR013083 -
Trre8g02507 1642 SUPERFAMILY FYVE/PHD zinc finger 1564 1615 IPR011011 -
Trre8g02507 1642 PANTHER PHD FINGER FAMILY PROTEIN 2 1618 - -
Trre8g02507 1642 SMART PHD_3 1567 1613 IPR001965 -
Trre8g02507 1642 SMART PHD_3 654 697 IPR001965 -
Trre8g02507 1642 SMART PHD_3 1343 1390 IPR001965 -
Trre8g02507 1642 Pfam DDT domain 462 513 IPR018501 -
Trre8g02507 1642 MobiDBLite consensus disorder prediction 1104 1124 - -
Trre8g02507 1642 MobiDBLite consensus disorder prediction 1433 1519 - -
Trre8g02507 1642 Pfam PHD-finger 655 697 IPR019787 -
Trre8g02507 1642 MobiDBLite consensus disorder prediction 1438 1453 - -
Trre8g02507 1642 MobiDBLite consensus disorder prediction 66 133 - -
Trre8g02507 1642 SUPERFAMILY FYVE/PHD zinc finger 649 706 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02507 Trre-Chr8 20565306 20576818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02507 1 1636 PHD Transcription Factor Family AT5G12400 40.258 0.0 1075
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre8g02507 DDT 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02507 - - mtr:11438137 2347.01