Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02486 ATGGAGATTGAAGTAGCAAGTGGTAGTAACAACAAAAGATGCAACATGGATGAGAGTGAAGATGAAACATATTGTGGTATGGATAGAGGAAGTTTCTTGGCATGGGAAGATCTAAGAGTAATGTTACCAAATTTTGGTAAAGGACCAACTAAAAGGTTACTTAATGGGCTTCATGGTTTTGCTGAGCCTGGTAGAATCATGGCTATTATGGGCCCTTCTGGCTCTGGAAAATCCACTTTGCTTGATTCACTTGCAGGTAGACTCTCAAAAAATGTGGTCATGACAGGAAATGTTCTTCTCAATGGGAAGAAAAAAAATCCAGGCTATGGTTTTGTTGCATACGTAACACAAGAAGATGTGTTAATGGGAACACTTACAGTAAGGGAAACAATAACATATTCGGCACACTTGCGTCTTCCAACATCGATGTCCAATGAAGAAGTTAACGATATAATCGAAGGAACAATCATAGAAATGGGTCTTCAAGATTGTGCTGATAGATTAATTGGTAACTGGCATTTGAGAGGTATAAGTGGTGGTGAAAGGAAAAGAACTAGCATTGCACTTGAGATTCTCACTAGGCCTCGGTTATTGTTTCTCGATGAACCAACCAGTGGTTTAGATAGCGCCTCGGCGTTTTTTGTTGTTCAAACTCTTAGAAATGTTGCTCGCGATGGAAGGACTGTTATTTCATCTATTCATCAGCCAAGTAGTGAAGTCTTTGCACTTTTTGATGATCTTTTCTTGCTCTCTAGTGGCGAAACTGTTTATTTCGGTGAAGCCAAAAAGGCTATAGAGTTTTTTGCTGAGGCCGGTTTCCCTTGTCCGCGTAAAAGAAATCCTTCTGATCACTTCCTAAGATGTATCAATTCTGATTTCGATGTTGTCACGGCTACACTCAAGGGATCTCAAAGGATTCCTGATGTTCCAAATTCAGCAGATCCTTTCGAGAATTTGGCTACAGCAGAGATTAAGTCAATGCTAGTTGAGAGATTCAGGCGTTCAACATACGCCAAAAGAGTAAAAGACAAGATTCAAGAAATATCAACCAATGAAGGACTTGAAAGTGAGACAAACCTTGGAAGCCAAGCTAGTTGGTGGAAGCAACTCACCACATTGACAAGAAGATCATTTGTGAACATGTGTAGAGATGTTGGTTACTATTGGTTGAGGATTATAATCTACATCATTGTATCTATATGTGTTGGAACAATCTATTTTGATGTTGGCTATAGCTATACTTCCATCTTGGCTCGTGGCGCGTGTGGTGCATTTATATCAGGATTTATGACTTTCATGTCAATTGGAGGCTTTCCATCTTTCATTGAAGAAATGAAGGTTTTTTATCGCGAAAGGATGAATGGATATTACGGCGTAGCAGCATATATTTTAGCCAACTTTCTATCATCATTCCCATTCTTGGTTGCTATTTCTCTTGCTTCTTGCACAATCACATATAACATGGTGAAATTCAGGCCAGGATTCATTCACTATGTGTTTTTCACTCTCAACATCTATGGTTGCATCTCAGTGATTGAGAGTCTCATGATGGTTGTGGCCTCACTTGTTCCAAATTTTCTCATGGGAATCATTACAGGAGCTGGAATCATTGGAATCATGATGATGACCTCTGGATTCTTTAGGTTGCTATCTGATCTTCCAAAACCGGTTTGGCGCTATCCGATTTCATATATCAGTTATGGCGCATGGGCGATACAGGGTTCATACAAGAATGACTTACTTGGACTAGAGTTTGAGCCACTAATCCCTGGTGACCCAAAACTAACAGGAGAATATGTGATAACACACATGCTAGGGATTGAATTAAGCCATTCAAAATGGTGGGACTTAACAGCACTTTTAATCATTCTCATATGTTATAGGCTACTTTTCTTTATTATTCTCAAGTTCAAGGAAAGAGCATCACCATTATTTAAAACACTTTATAATAAGAGAACCATACAACAGCTTGAGAAAAGACCTTCTTTTAGGAAATTTCCTTCTTTGAGGCATCAACCACTTCATTCACTATCTTCTCAAGAGGGTCTTAATTCTCCACTCCACAACTAG 2070 0.3913 MEIEVASGSNNKRCNMDESEDETYCGMDRGSFLAWEDLRVMLPNFGKGPTKRLLNGLHGFAEPGRIMAIMGPSGSGKSTLLDSLAGRLSKNVVMTGNVLLNGKKKNPGYGFVAYVTQEDVLMGTLTVRETITYSAHLRLPTSMSNEEVNDIIEGTIIEMGLQDCADRLIGNWHLRGISGGERKRTSIALEILTRPRLLFLDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFALFDDLFLLSSGETVYFGEAKKAIEFFAEAGFPCPRKRNPSDHFLRCINSDFDVVTATLKGSQRIPDVPNSADPFENLATAEIKSMLVERFRRSTYAKRVKDKIQEISTNEGLESETNLGSQASWWKQLTTLTRRSFVNMCRDVGYYWLRIIIYIIVSICVGTIYFDVGYSYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYRERMNGYYGVAAYILANFLSSFPFLVAISLASCTITYNMVKFRPGFIHYVFFTLNIYGCISVIESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGAWAIQGSYKNDLLGLEFEPLIPGDPKLTGEYVITHMLGIELSHSKWWDLTALLIILICYRLLFFIILKFKERASPLFKTLYNKRTIQQLEKRPSFRKFPSLRHQPLHSLSSQEGLNSPLHN 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02486 689 Pfam ABC-2 type transporter 234 290 IPR043926 GO:0140359
Trre8g02486 689 Gene3D - 33 271 IPR027417 -
Trre8g02486 689 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 277 IPR003439 GO:0005524
Trre8g02486 689 SMART AAA_5 63 234 IPR003593 GO:0016887
Trre8g02486 689 CDD ABCG_EPDR 30 259 - -
Trre8g02486 689 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 22 660 - -
Trre8g02486 689 Pfam ABC transporter 61 205 IPR003439 GO:0005524
Trre8g02486 689 Pfam ABC-2 type transporter 369 578 IPR013525 GO:0016020|GO:0140359
Trre8g02486 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 269 IPR027417 -
Trre8g02486 689 FunFam ABC transporter G family member 11 27 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02486 Trre-Chr8 20325832 20334656 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02486 20 278 Calmodulin-binding Proteins AT2G36910 27.046 1.66e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02486 K05681 - gmx:100777598 1168.3