Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02481 ATGGAGATAGAACAAAACATAGGTAATGATGTTGGAAACAATGAAATGATGAAAGGTGTTTCAAAAAGAGGGATGCATCTAGTGTGGGAAGATTTGAGTGTTGTAATTCCAAACTTTGGGAGTGGACACACAAAGAGATTGCTTAACGGTTTGAATGGATATGCTGAACCAAACAGAATCATGGCTGTTATGGGTCCATCTGGCTCTGGAAAATCTACTCTTCTTGATGCTTTGGCAGGTAGACTCTCTGGAAATGTTATCATGTCTGGTAAAGTGCTTTTAAATGGAAAGAAAAGAAGATTAGACTATGGAGTTGTAGCTTATGTAACACAAGAAGACATATTGTTGGGAACACTAACAGTTAGAGAGACAATATCATACTCAGCAAATTTAAGGCTTCCATGTAGCATGACAAAAGAAGAGGTAAATGACATTGTAGAGGGTACAATTATAGAAATGGGTCTTCAAGATTGTGCTGATAGACTTATAGGAAATTGGCACTTAAGAGGTATAAGTGGTGGAGAAAAGAAAAGATTAAGTATAGCACTTGAAATATTAACAAGGCCTTCTCTCTTGTTCCTTGATGAACCTACAAGTGGTTTGGACAGTGCCTCAGCTTATTTTGTTGCTCAAACTTTGAGAAACATAGCTCATGATGGAAAAACTGTTATTTCTTCTATTCATCAACCAAGTAGTGAGGTTTTTGCATTATTTGATCATCTCTTTCTACTTTCTGGAGGACAAACTATTTATTTTGGACCAGCTGATAAAGCAGTTGAGTTCTTTGGAAAAGCAGGATTTCCATGTCCAAGTAGAAGAAACCCTTCTGATCATTTCCTCCGTTGTATTAATTCAGACTTCGACACTGTCACAACTACTATGGCCTCACGGAGTACACATGAACAAAAAACATTAGCACCATCAATAATGAACTTACCAACATCAGCAATCAAAGCAATACTCATAGAGAAATACCGTTGGTCAGAATATGCAATTTGTGCAAGAGCAAAAATCAAAGAAATTTCAAACTTTGAAGGACATGATTATGAAAACAAAATCAAGAGTCAAGCCAAATGGTGGAAGCAATTATCAACTTTGACAAAGAGATCTTTTGTAAACATGTCTAGAGATATAGGGTACTATTGGATAAGGTTAACAATCTATGTCGCCTTATCTTTGTCTGTCGGGACAATCTTTTTCGACGTTGGATCAAGTTCAAGTTATAGATCCATTTTTGCAAGAGGAGCTTGTGGCGCCTTTATATCGGGTTTCATGACATTCATGTCCATAGGAGGCTTCCCATCATTCATAGAAGAAATGAAGGTCTTCTACAAAGAAAGGCTCAATGGATATTATGGAATTGCAGTCTACATTCTGTCAAATTTTCTCTCTTCATTTCCTTTTGTAGCTGTGATGTCATTTGCTACCGGGACTATAACATATTATATGGTTAGGTTTCGTCCTGAGTTTTCACATCTTTTGTATATCTGTTTGGATCTTTTGGCGTGTATCGCGGTTGTGGAGACCTCAATGATGATTATAGCTGCATTGGTTCCCAACTTTCTTTTGGGATTGATAATTGGAGCAGGATATATTGGTCTTATGATGATGACTGCTGGCTATTTTCGACAGATCTACGATCTTCCTAAATTCTTCTGGCGTTACCCTATTTCATACATCAATTACGGTGCATGGGCATTGCAGGGAGCATTCAAGAATGACTTGATTGGGATGGAGTTTGATCCTATGATACCTGGTGGCCCAAAACTTAAAGGAGAAATAATCCTCACAACAATGCTAGGAATGAAAGATGATTATTCAAAATGGTGGGATCTAGCTGTGGTCATCTTCATCCTCGTATTGCTTCGAGTTATTTTCTTTTTCATTCTCAAATTTAAGGAGAGAGCAATACCTTTCCTTCACAGTATCTACACAAAGCAAACACTGGAACGTATCAAGAAGCGACCTTCGTTCAGGAAAACACCATCGTTCGCTTCCAAGAGACACCAACCACTGCATCCATTGTCTTCTCAAGAGGGTCTCAACTCTCCATGTCATTAG 2061 0.3799 MEIEQNIGNDVGNNEMMKGVSKRGMHLVWEDLSVVIPNFGSGHTKRLLNGLNGYAEPNRIMAVMGPSGSGKSTLLDALAGRLSGNVIMSGKVLLNGKKRRLDYGVVAYVTQEDILLGTLTVRETISYSANLRLPCSMTKEEVNDIVEGTIIEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSASAYFVAQTLRNIAHDGKTVISSIHQPSSEVFALFDHLFLLSGGQTIYFGPADKAVEFFGKAGFPCPSRRNPSDHFLRCINSDFDTVTTTMASRSTHEQKTLAPSIMNLPTSAIKAILIEKYRWSEYAICARAKIKEISNFEGHDYENKIKSQAKWWKQLSTLTKRSFVNMSRDIGYYWIRLTIYVALSLSVGTIFFDVGSSSSYRSIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERLNGYYGIAVYILSNFLSSFPFVAVMSFATGTITYYMVRFRPEFSHLLYICLDLLACIAVVETSMMIIAALVPNFLLGLIIGAGYIGLMMMTAGYFRQIYDLPKFFWRYPISYINYGAWALQGAFKNDLIGMEFDPMIPGGPKLKGEIILTTMLGMKDDYSKWWDLAVVIFILVLLRVIFFFILKFKERAIPFLHSIYTKQTLERIKKRPSFRKTPSFASKRHQPLHPLSSQEGLNSPCH 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02481 686 CDD ABCG_EPDR 24 253 - -
Trre8g02481 686 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 20 655 - -
Trre8g02481 686 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 271 IPR003439 GO:0005524
Trre8g02481 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 268 IPR027417 -
Trre8g02481 686 Gene3D - 17 265 IPR027417 -
Trre8g02481 686 MobiDBLite consensus disorder prediction 670 686 - -
Trre8g02481 686 FunFam ABC transporter G family member 11 21 265 - -
Trre8g02481 686 SMART AAA_5 57 256 IPR003593 GO:0016887
Trre8g02481 686 ProSitePatterns ABC transporters family signature. 171 185 IPR017871 GO:0005524|GO:0016887
Trre8g02481 686 MobiDBLite consensus disorder prediction 656 686 - -
Trre8g02481 686 Pfam ABC transporter 48 199 IPR003439 GO:0005524
Trre8g02481 686 Pfam ABC-2 type transporter 362 573 IPR013525 GO:0016020|GO:0140359
Trre8g02481 686 Pfam ABC-2 type transporter 228 288 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02481 Trre-Chr8 20263476 20272981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02481 46 242 Calmodulin-binding Proteins AT2G36910 29.954 4.20e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02481 K05681 - gmx:100788651 1127.85