Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02438 ATGGGTTGTGGAACTACGATTTCGGGTCAATCAGGCTCGACGAGTAGGAGTGCCGGGTTACCGTCTAGTCGGAGTGAGCAGACGACGGGAACAGCTGCCGGTAATAATGCTGCTCTCAAATTGAATCATCTTGATATACAGGATGATGATGCTGCTTCACAGGGAGTGGTTGCTAGCAAGAGGAAGAAGAGAGGCCAACGGGCTGTTGGGGGTGATAAGAATGGAAGAGGGCTCCGGCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGTAAAGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTTCTGATCCAAGCAATGGTGTTATGTCCCCTGATCAGCAACAATACGATGAGAAAAACATCCGGCGAAGGGTCTATGATGCTCTTAATGTTCTCATGGCTATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACCAGTCAGAATGATATTGAAGAACTAAAGAAAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAGGAAAGCAGCGTATCTGCAGGAGCTCGAGGAGCAATTTGTAGGTCTTGAGAACCTTATTCAACGAAATGAACAATTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTTTGGTACAGACCCGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAATAGTTCTCCTTTTGAGCTGCATGACGACAATTATGTTCTGAAGGCAATGAATTTTGGTGAGAGCGAGAGACCACAGAGTGACAATGTTACACACAATATTACGGATGGAAGGGAAGGTTCTAGCATGTCAGGCATGTATCAGTCACAGGTTCATCCTTCAGTTTCAAACATGTCAGTTAGGCCTCCCACATCACCTCCACTGCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAGCATTGA 984 0.438 MGCGTTISGQSGSTSRSAGLPSSRSEQTTGTAAGNNAALKLNHLDIQDDDAASQGVVASKRKKRGQRAVGGDKNGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNGVMSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQNDIEELKKERLGLRNRIERKAAYLQELEEQFVGLENLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMNFGESERPQSDNVTHNITDGREGSSMSGMYQSQVHPSVSNMSVRPPTSPPLPGILKARVKQEH 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02438 327 FunFam Transcription factor-like protein DPB 68 161 - -
Trre8g02438 327 MobiDBLite consensus disorder prediction 270 306 - -
Trre8g02438 327 SUPERFAMILY "Winged helix" DNA-binding domain 76 157 IPR036390 -
Trre8g02438 327 SMART DP_2 163 325 IPR014889 -
Trre8g02438 327 Pfam Transcription factor DP 164 272 IPR014889 -
Trre8g02438 327 Pfam E2F/DP family winged-helix DNA-binding domain 76 156 IPR003316 GO:0005667|GO:0006355
Trre8g02438 327 CDD DP_DD 161 264 IPR014889 -
Trre8g02438 327 Gene3D - 68 161 IPR036388 -
Trre8g02438 327 FunFam Transcription factor-like protein DPB 162 288 - -
Trre8g02438 327 MobiDBLite consensus disorder prediction 52 77 - -
Trre8g02438 327 SUPERFAMILY E2F-DP heterodimerization region 163 276 IPR037241 -
Trre8g02438 327 MobiDBLite consensus disorder prediction 1 36 - -
Trre8g02438 327 SMART E2F_TDP_2 73 156 IPR003316 GO:0005667|GO:0006355
Trre8g02438 327 MobiDBLite consensus disorder prediction 270 327 - -
Trre8g02438 327 PANTHER TRANSCRIPTION FACTOR DP 6 305 IPR015648 GO:0005667|GO:0051726
Trre8g02438 327 PIRSF Txn_factor_DP 4 327 IPR015648 GO:0005667|GO:0051726
Trre8g02438 327 Coils Coil 172 206 - -
Trre8g02438 327 Gene3D Transcription factor DP 162 299 IPR038168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02438 Trre-Chr8 19750196 19753838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02438 62 264 E2F-DP Transcription Factor Family AT5G02470 54.146 9.68e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre8g02438 DP 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02438 K04683 - qsu:112000390 523.472